Wall clock time and date at job start Mon Mar 30 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99924 * 2 1 4 4 O 1.21583 * 120.00267 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00249 * 179.97438 * 3 2 1 6 6 C 1.47067 * 136.05152 * 359.62914 * 5 3 2 7 7 C 1.53497 * 87.98534 * 153.13820 * 6 5 3 8 8 O 1.42898 * 114.38988 * 139.66779 * 7 6 5 9 9 C 1.34922 * 117.00237 * 116.31410 * 8 7 6 10 10 H 1.07997 * 119.99845 * 0.02562 * 9 8 7 11 11 C 1.38636 * 119.99993 * 180.02562 * 9 8 7 12 12 N 1.31576 * 120.00201 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99663 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47513 * 60.00171 * 13 11 9 15 15 H 1.48503 * 109.46619 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47285 * 299.99305 * 13 11 9 17 17 C 1.47066 * 136.06263 * 179.97438 * 5 3 2 18 18 H 1.09000 * 109.47417 * 180.02562 * 1 2 3 19 19 H 1.09005 * 109.47303 * 300.00582 * 1 2 3 20 20 H 1.09000 * 109.47219 * 60.00222 * 1 2 3 21 21 H 0.96995 * 119.99876 * 179.97438 * 2 1 3 22 22 H 1.09007 * 113.46858 * 267.91303 * 6 5 3 23 23 H 1.08993 * 113.47208 * 38.35639 * 6 5 3 24 24 H 1.09006 * 114.20377 * 272.47966 * 7 6 5 25 25 H 0.97001 * 120.00441 * 180.02562 * 12 11 9 26 26 H 1.09005 * 113.46156 * 321.64401 * 17 5 3 27 27 H 1.08994 * 113.46837 * 92.02042 * 17 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.5455 0.1467 0.0078 7 6 5.4566 1.1648 -0.6918 8 8 6.8062 1.1695 -0.2221 9 6 7.7636 0.8187 -1.1057 10 1 7.4936 0.5513 -2.1166 11 6 9.0939 0.8014 -0.7159 12 7 9.4229 1.1277 0.5156 13 14 10.4194 0.3164 -1.9395 14 1 10.3955 1.2523 -3.0923 15 1 11.7484 0.3782 -1.2799 16 1 10.1683 -1.0664 -2.4191 17 6 4.5456 2.1878 0.0002 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.9499 -0.8400 0.0004 22 1 4.8830 -0.1216 1.0089 23 1 4.3143 -0.7232 -0.6069 24 1 5.3789 1.1610 -1.7791 25 1 10.3537 1.1160 0.7882 26 1 4.3142 3.0531 -0.6209 27 1 4.8822 2.4643 0.9994 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259877139.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:20 Heat of formation + Delta-G solvation = -42.671643 kcal Electronic energy + Delta-G solvation = -12604.620266 eV Core-core repulsion = 10171.016910 eV Total energy + Delta-G solvation = -2433.603356 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.50529 -39.52064 -37.17560 -35.58520 -33.75083 -30.48386 -27.34615 -26.89554 -26.21798 -22.69874 -20.87074 -19.89587 -19.01758 -17.72868 -17.39061 -16.55924 -16.02209 -15.75297 -15.16772 -14.91414 -14.55744 -13.95856 -13.87027 -13.32280 -13.24259 -12.98072 -12.78189 -12.49947 -12.09835 -11.52606 -11.37564 -11.15017 -10.35437 -10.11624 -9.61014 -8.15234 -5.85331 1.39703 1.47601 1.52440 1.59531 2.01220 2.37512 2.93488 3.16287 3.62435 3.78220 3.98375 4.27042 4.44153 4.53059 4.63053 4.64582 4.66411 4.71111 4.93370 5.05461 5.29234 5.44042 6.16948 6.23439 6.95247 7.27998 7.45867 8.01843 9.08316 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.089467 B = 0.006640 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.888389 B = 4215.679071 C = 4323.066246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.736 5.736 3 C 0.728 3.272 4 O -0.638 6.638 5 N -0.660 5.660 6 C 0.093 3.907 7 C 0.059 3.941 8 O -0.306 6.306 9 C -0.379 4.379 10 H 0.082 0.918 11 C -0.039 4.039 12 N -0.938 5.938 13 Si 1.004 2.996 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.119 3.881 18 H 0.118 0.882 19 H 0.048 0.952 20 H 0.049 0.951 21 H 0.412 0.588 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.261 0.739 26 H 0.075 0.925 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 -6.439 -3.172 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.391 5.391 3 C 0.431 3.569 4 O -0.521 6.521 5 N -0.400 5.400 6 C -0.030 4.030 7 C -0.002 4.002 8 O -0.220 6.220 9 C -0.458 4.458 10 H 0.100 0.900 11 C -0.232 4.232 12 N -0.582 5.582 13 Si 0.826 3.174 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.186 1.186 17 C -0.005 4.005 18 H 0.136 0.864 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.247 0.753 22 H 0.103 0.897 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.192 -5.634 -2.885 13.737 hybrid contribution 0.801 -0.305 -0.307 0.911 sum -11.391 -5.939 -3.193 13.237 Atomic orbital electron populations 1.21602 0.76479 1.04386 1.01397 1.44828 1.08470 1.06344 1.79488 1.15411 0.79153 0.84809 0.77542 1.90861 1.67514 1.32551 1.61167 1.48262 1.01883 1.12878 1.76983 1.23597 0.83665 0.93773 1.01926 1.23650 0.83591 0.95404 0.97506 1.85638 1.11768 1.86638 1.37908 1.21414 0.86772 1.44438 0.93140 0.90039 1.26179 0.99383 0.98791 0.98879 1.70175 1.18094 1.50993 1.18963 0.84843 0.76387 0.79124 0.77037 1.19089 1.20942 1.18581 1.23100 0.82755 0.93351 1.01298 0.86395 0.93338 0.93211 0.75260 0.89741 0.88139 0.89170 0.93051 0.90612 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 10.70 127.77 1.37 3.27 15 2 N -0.74 -17.59 5.72 -500.19 -2.86 -20.45 15 3 C 0.73 25.07 8.79 179.05 1.57 26.64 15 4 O -0.64 -27.13 17.12 -3.98 -0.07 -27.20 15 5 N -0.66 -22.66 3.69 -877.14 -3.24 -25.89 15 6 C 0.09 3.01 8.14 83.18 0.68 3.69 15 7 C 0.06 2.37 4.71 30.92 0.15 2.51 15 8 O -0.31 -16.40 9.84 -81.91 -0.81 -17.21 15 9 C -0.38 -20.82 9.86 67.92 0.67 -20.15 15 10 H 0.08 4.07 7.59 -2.91 -0.02 4.05 15 11 C -0.04 -2.16 5.49 84.83 0.47 -1.70 15 12 N -0.94 -57.44 13.67 21.61 0.30 -57.14 15 13 Si 1.00 42.85 29.55 68.60 2.03 44.87 15 14 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 15 H -0.28 -12.03 7.11 99.48 0.71 -11.33 15 16 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 17 C 0.12 4.51 8.46 83.17 0.70 5.21 15 18 H 0.12 1.10 8.14 -2.39 -0.02 1.08 15 19 H 0.05 0.98 8.14 -2.38 -0.02 0.96 15 20 H 0.05 0.99 8.14 -2.39 -0.02 0.97 15 21 H 0.41 7.52 8.54 -92.71 -0.79 6.73 15 22 H 0.08 2.83 8.14 -2.38 -0.02 2.82 15 23 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 24 H 0.09 3.45 7.81 -2.38 -0.02 3.43 15 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 26 H 0.08 2.79 8.14 -2.38 -0.02 2.77 15 27 H 0.08 3.12 8.14 -2.39 -0.02 3.10 15 Total: -1.00 -73.27 246.30 1.34 -71.93 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.38 Total: 11.60 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 5.60 Total: 19.49 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -5.80 Total: -103.49 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.87 Total: -44.41 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -73.27 1.34 -71.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877139.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.257 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds