Wall clock time and date at job start Mon Mar 30 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47037 * 269.99713 * 3 2 1 5 5 H 1.48504 * 109.47225 * 29.99234 * 3 2 1 6 6 H 1.48497 * 109.47492 * 149.99496 * 3 2 1 7 7 C 1.38634 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99670 * 180.02562 * 7 2 1 9 9 O 1.34921 * 120.00450 * 0.02562 * 7 2 1 10 10 C 1.42901 * 117.00094 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46860 * 180.02562 * 10 9 7 12 12 C 1.53950 * 113.74237 * 86.26274 * 11 10 9 13 13 N 1.47925 * 85.99684 * 138.00209 * 12 11 10 14 14 C 1.34780 * 134.49772 * 155.35643 * 13 12 11 15 15 N 1.34774 * 120.00188 * 359.97438 * 14 13 12 16 16 O 1.21584 * 119.99378 * 179.97438 * 14 13 12 17 17 C 1.47579 * 91.00789 * 335.35638 * 13 12 11 18 18 H 0.97001 * 119.99814 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47342 * 60.00676 * 10 9 7 20 20 H 1.08998 * 109.47492 * 299.99888 * 10 9 7 21 21 H 1.09002 * 112.94408 * 314.66691 * 11 10 9 22 22 H 1.09006 * 113.76402 * 252.36366 * 12 11 10 23 23 H 1.08997 * 113.76968 * 23.74991 * 12 11 10 24 24 H 0.97005 * 119.99957 * 0.02562 * 15 14 13 25 25 H 0.96995 * 120.00092 * 179.97438 * 15 14 13 26 26 H 1.09003 * 113.77049 * 270.34039 * 17 13 12 27 27 H 1.08993 * 113.77081 * 138.93800 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3344 -2.3691 0.0005 10 6 2.1127 -3.5676 0.0005 11 6 1.1806 -4.7809 -0.0001 12 6 0.7307 -5.2162 -1.4066 13 7 0.9534 -6.6009 -0.9363 14 6 0.4690 -7.8080 -1.2897 15 7 -0.4320 -7.9069 -2.2871 16 8 0.8450 -8.8076 -0.7087 17 6 1.9190 -6.1297 0.0754 18 1 -0.4850 0.8401 -0.0004 19 1 2.7414 -3.5925 0.8905 20 1 2.7415 -3.5925 -0.8894 21 1 0.3619 -4.6882 0.7135 22 1 -0.3124 -4.9867 -1.6247 23 1 1.4105 -4.9071 -2.2006 24 1 -0.7317 -7.1093 -2.7508 25 1 -0.7803 -8.7756 -2.5417 26 1 2.9472 -6.0884 -0.2842 27 1 1.8240 -6.6291 1.0396 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259894997.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:20 Heat of formation + Delta-G solvation = -31.472526 kcal Electronic energy + Delta-G solvation = -12512.418695 eV Core-core repulsion = 10079.300970 eV Total energy + Delta-G solvation = -2433.117725 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.15549 -37.90009 -35.92568 -33.50771 -31.82343 -29.83200 -26.00841 -25.68045 -23.88389 -20.66443 -19.37344 -17.86966 -17.50876 -16.87599 -15.98963 -15.13382 -14.91710 -14.25602 -14.04730 -13.62356 -13.03992 -12.42076 -12.36441 -11.91094 -11.38762 -11.00952 -10.70339 -10.63999 -10.28583 -9.95807 -9.66188 -9.52216 -9.21008 -8.50366 -8.01648 -5.99704 -3.63761 2.73284 3.28404 3.30587 3.32249 3.35350 4.19416 4.26441 4.68520 5.13743 5.26307 5.34367 5.50125 5.66854 5.75157 5.81064 5.93629 6.16023 6.46800 6.50689 6.70397 6.89259 7.12982 7.43572 8.07063 8.38358 8.71190 9.44037 10.10603 11.21227 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.091636 B = 0.006325 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.484693 B = 4425.579718 C = 4596.230755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.024 3.976 3 Si 0.925 3.075 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.362 4.362 8 H 0.063 0.937 9 O -0.294 6.294 10 C 0.081 3.919 11 C -0.110 4.110 12 C 0.110 3.890 13 N -0.664 5.664 14 C 0.728 3.272 15 N -0.867 5.867 16 O -0.605 6.605 17 C 0.135 3.865 18 H 0.258 0.742 19 H 0.030 0.970 20 H 0.028 0.972 21 H 0.107 0.893 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.397 0.603 25 H 0.412 0.588 26 H 0.083 0.917 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -9.060 -4.077 9.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.441 4.441 8 H 0.081 0.919 9 O -0.210 6.210 10 C 0.003 3.997 11 C -0.129 4.129 12 C -0.012 4.012 13 N -0.404 5.404 14 C 0.429 3.571 15 N -0.434 5.434 16 O -0.484 6.484 17 C 0.011 3.989 18 H 0.068 0.932 19 H 0.048 0.952 20 H 0.046 0.954 21 H 0.125 0.875 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.225 0.775 25 H 0.243 0.757 26 H 0.101 0.899 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.951 -9.721 -3.644 10.425 hybrid contribution 0.377 0.868 -0.473 1.058 sum 1.328 -8.853 -4.118 9.854 Atomic orbital electron populations 1.70015 1.05402 1.25970 1.51752 1.24950 0.95668 0.97753 0.99108 0.85969 0.78707 0.82043 0.78061 1.20718 1.20894 1.20034 1.20794 0.90221 0.82625 1.50488 0.91929 1.85626 1.31636 1.10335 1.93367 1.22011 0.92563 0.86663 0.98491 1.23043 0.99739 0.92918 0.97199 1.23384 1.02271 0.77524 0.98005 1.49251 1.46481 1.04731 1.39969 1.15465 0.79386 0.82098 0.80124 1.42902 1.48359 1.13009 1.39160 1.90929 1.64842 1.34971 1.57677 1.23050 0.92988 0.91061 0.91756 0.93192 0.95155 0.95439 0.87452 0.89989 0.89553 0.77492 0.75676 0.89918 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.67 55.48 0.76 -26.32 15 2 C 0.02 0.67 5.49 -17.51 -0.10 0.58 15 3 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.36 -10.26 9.89 30.88 0.31 -9.95 15 8 H 0.06 1.66 7.77 -52.48 -0.41 1.26 15 9 O -0.29 -7.96 9.78 -16.48 -0.16 -8.12 15 10 C 0.08 1.62 5.86 37.16 0.22 1.83 15 11 C -0.11 -1.79 4.19 -89.69 -0.38 -2.17 15 12 C 0.11 1.58 8.02 -2.77 -0.02 1.56 15 13 N -0.66 -9.94 3.62 -183.81 -0.66 -10.60 15 14 C 0.73 11.48 9.03 -86.92 -0.79 10.69 15 15 N -0.87 -9.55 8.88 27.63 0.25 -9.30 15 16 O -0.60 -11.90 17.91 5.29 0.09 -11.80 15 17 C 0.13 1.93 8.40 -2.96 -0.02 1.91 15 18 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 19 H 0.03 0.59 8.14 -51.93 -0.42 0.16 15 20 H 0.03 0.52 7.87 -51.93 -0.41 0.11 15 21 H 0.11 1.86 8.14 -51.93 -0.42 1.44 15 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.09 1.18 7.92 -51.93 -0.41 0.76 15 24 H 0.40 3.52 8.44 -40.82 -0.34 3.18 15 25 H 0.41 3.75 8.93 -40.82 -0.36 3.39 15 26 H 0.08 1.07 8.10 -51.93 -0.42 0.65 15 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 245.53 15.07 3.70 3.70 Total: -1.00 -35.01 245.53 -5.01 -40.02 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.18 Total: 1.52 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.78 Total: 4.45 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.34 Total: -46.22 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.07 Total: -19.92 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -35.01 -5.01 -40.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894997.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.548 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds