Wall clock time and date at job start Mon Mar 30 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47116 * 2 1 4 4 H 1.09004 * 109.47039 * 184.95608 * 3 2 1 5 5 C 1.50695 * 109.47161 * 304.95983 * 3 2 1 6 6 H 1.08002 * 119.99974 * 114.55142 * 5 3 2 7 7 C 1.37876 * 120.00043 * 294.82283 * 5 3 2 8 8 N 1.31510 * 120.00240 * 4.60559 * 7 5 3 9 9 Si 1.86807 * 120.00118 * 184.60137 * 7 5 3 10 10 H 1.48496 * 109.46805 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47154 * 120.00241 * 9 7 5 12 12 H 1.48499 * 109.46994 * 240.00314 * 9 7 5 13 13 C 1.52999 * 109.46961 * 64.96104 * 3 2 1 14 14 H 1.09006 * 108.85198 * 302.87349 * 13 3 2 15 15 C 1.52947 * 108.88923 * 184.43655 * 13 3 2 16 16 C 1.55148 * 108.96125 * 209.10439 * 15 13 3 17 17 S 1.83986 * 100.90951 * 41.43568 * 16 15 13 18 18 C 1.53706 * 108.89122 * 61.45164 * 13 3 2 19 19 H 1.09003 * 109.46950 * 174.99010 * 1 2 3 20 20 H 1.08996 * 109.47225 * 294.98988 * 1 2 3 21 21 H 1.09002 * 109.47291 * 54.99301 * 1 2 3 22 22 H 1.09000 * 109.46932 * 240.00226 * 2 1 3 23 23 H 1.09000 * 109.47414 * 120.00258 * 2 1 3 24 24 H 0.97003 * 120.00597 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.59861 * 329.03388 * 15 13 3 26 26 H 1.09003 * 109.60501 * 89.16872 * 15 13 3 27 27 H 1.08998 * 111.13330 * 283.52598 * 16 15 13 28 28 H 1.08994 * 111.16840 * 159.36494 * 16 15 13 29 29 H 1.08996 * 110.34430 * 242.49436 * 18 13 3 30 30 H 1.09006 * 110.33825 * 4.74476 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 -0.0888 5 6 1.4399 2.1874 -1.1644 6 1 0.7596 3.0075 -0.9880 7 6 1.7549 1.8185 -2.4550 8 7 2.5062 0.7612 -2.6719 9 14 1.1144 2.8205 -3.8956 10 1 0.2977 3.9518 -3.3874 11 1 2.2598 3.3489 -4.6792 12 1 0.2761 1.9569 -4.7654 13 6 1.6343 2.1268 1.3069 14 1 0.5504 2.0746 1.4102 15 6 2.0528 3.5967 1.2468 16 6 2.3440 4.0972 2.6862 17 16 3.2480 2.6531 3.3808 18 6 2.2828 1.3785 2.4826 19 1 -0.3633 -1.0238 -0.0897 20 1 -0.3633 0.4341 0.9314 21 1 -0.3634 0.5896 -0.8417 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.7282 0.5018 -3.5798 25 1 2.9502 3.6967 0.6363 26 1 1.2485 4.1883 0.8095 27 1 1.4191 4.2817 3.2327 28 1 2.9741 4.9864 2.6737 29 1 1.5161 0.9562 3.1321 30 1 2.9428 0.5931 2.1140 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938003.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:59 Heat of formation + Delta-G solvation = -26.978374 kcal Electronic energy + Delta-G solvation = -11535.061336 eV Core-core repulsion = 9648.431706 eV Total energy + Delta-G solvation = -1886.629630 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.27701 -33.26259 -31.37888 -28.73443 -27.05095 -23.89363 -23.42607 -20.36814 -18.42167 -16.32755 -16.15944 -14.85560 -14.28759 -13.76812 -13.38780 -12.87380 -12.66154 -12.03746 -11.88046 -11.44622 -11.24343 -10.97889 -10.95658 -10.54304 -10.41952 -10.20515 -9.81426 -9.58102 -9.28501 -8.93998 -8.70921 -8.34088 -7.27771 -6.00683 -4.04477 2.39029 2.84144 3.27247 3.36415 3.38570 4.41660 5.24377 5.34024 5.36723 5.60479 5.66244 5.82518 5.98479 6.21285 6.33441 6.43906 6.47118 6.65199 6.79231 6.83365 6.97223 7.10393 7.45506 7.50751 7.72637 7.89107 8.08781 8.41380 8.97556 9.58834 11.06189 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.011602 C = 0.010177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.869504 B = 2412.703909 C = 2750.701103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 C 0.057 3.943 4 H 0.031 0.969 5 C -0.505 4.505 6 H 0.055 0.945 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 C -0.089 4.089 14 H 0.066 0.934 15 C -0.103 4.103 16 C -0.065 4.065 17 S -0.341 6.341 18 C -0.049 4.049 19 H 0.021 0.979 20 H 0.028 0.972 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.016 0.984 24 H 0.259 0.741 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 2.725 6.777 7.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C 0.038 3.962 4 H 0.049 0.951 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.109 4.109 14 H 0.085 0.915 15 C -0.141 4.141 16 C -0.213 4.213 17 S -0.115 6.115 18 C -0.197 4.197 19 H 0.040 0.960 20 H 0.048 0.952 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.966 2.537 7.426 7.906 hybrid contribution -1.284 0.515 -1.642 2.147 sum -2.250 3.052 5.783 6.915 Atomic orbital electron populations 1.21651 0.98045 0.98438 1.00722 1.21576 0.94454 0.99491 0.99784 1.18844 0.96658 0.91436 0.89228 0.95067 1.21105 1.27236 1.15620 0.90357 0.92666 1.24925 0.95303 0.94880 0.98716 1.69910 1.37739 1.24419 1.20549 0.86667 0.78668 0.80421 0.83033 1.19861 1.21100 1.21217 1.21750 0.99732 0.93345 0.96049 0.91536 1.22331 1.03210 0.95700 0.92907 1.24402 1.00865 0.96858 0.99215 1.87446 1.52816 1.06860 1.64388 1.24181 0.99848 0.97898 0.97775 0.96006 0.95247 0.91606 0.89854 0.96581 0.93142 0.90069 0.90710 0.90178 0.88668 0.90647 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.32 37.16 0.35 -2.37 16 2 C -0.12 -2.59 5.30 -26.73 -0.14 -2.73 16 3 C 0.06 1.33 1.24 -91.78 -0.11 1.21 16 4 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.50 -12.78 6.17 -34.44 -0.21 -12.99 16 6 H 0.06 1.39 7.05 -52.49 -0.37 1.02 16 7 C 0.06 1.67 5.36 -17.82 -0.10 1.58 16 8 N -0.89 -24.59 11.58 55.43 0.64 -23.95 16 9 Si 0.88 20.64 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.09 -1.72 2.10 -90.28 -0.19 -1.91 16 14 H 0.07 1.29 6.50 -51.93 -0.34 0.95 16 15 C -0.10 -1.85 4.85 -25.62 -0.12 -1.97 16 16 C -0.07 -1.00 7.52 38.29 0.29 -0.72 16 17 S -0.34 -5.95 23.23 -107.50 -2.50 -8.44 16 18 C -0.05 -0.88 6.24 37.52 0.23 -0.64 16 19 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 20 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 21 H 0.06 1.49 6.88 -51.93 -0.36 1.13 16 22 H 0.08 2.13 6.44 -51.93 -0.33 1.80 16 23 H 0.02 0.32 6.47 -51.93 -0.34 -0.01 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.08 1.61 7.81 -51.93 -0.41 1.21 16 26 H 0.07 1.31 7.66 -51.93 -0.40 0.92 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.82 6.59 -51.93 -0.34 1.48 16 LS Contribution 244.95 15.07 3.69 3.69 Total: -1.00 -26.46 244.95 -7.67 -34.13 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.48 Total: -0.51 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -0.01 Total: -20.54 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.64 Total: -23.95 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.50 Total: -8.44 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.46 -7.67 -34.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938003.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.156 kcal (2) G-P(sol) polarization free energy of solvation -26.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds