Wall clock time and date at job start Mon Mar 30 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47116 * 2 1 4 4 H 1.09004 * 109.47039 * 184.95608 * 3 2 1 5 5 C 1.50695 * 109.47161 * 304.95983 * 3 2 1 6 6 H 1.08002 * 119.99974 * 114.55142 * 5 3 2 7 7 C 1.37876 * 120.00043 * 294.82283 * 5 3 2 8 8 N 1.31510 * 120.00240 * 4.60559 * 7 5 3 9 9 Si 1.86807 * 120.00118 * 184.60137 * 7 5 3 10 10 H 1.48496 * 109.46805 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47154 * 120.00241 * 9 7 5 12 12 H 1.48499 * 109.46994 * 240.00314 * 9 7 5 13 13 C 1.52999 * 109.46961 * 64.96104 * 3 2 1 14 14 H 1.09006 * 108.85198 * 302.87349 * 13 3 2 15 15 C 1.52947 * 108.88923 * 184.43655 * 13 3 2 16 16 C 1.55148 * 108.96125 * 209.10439 * 15 13 3 17 17 S 1.83986 * 100.90951 * 41.43568 * 16 15 13 18 18 C 1.53706 * 108.89122 * 61.45164 * 13 3 2 19 19 H 1.09003 * 109.46950 * 174.99010 * 1 2 3 20 20 H 1.08996 * 109.47225 * 294.98988 * 1 2 3 21 21 H 1.09002 * 109.47291 * 54.99301 * 1 2 3 22 22 H 1.09000 * 109.46932 * 240.00226 * 2 1 3 23 23 H 1.09000 * 109.47414 * 120.00258 * 2 1 3 24 24 H 0.97003 * 120.00597 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.59861 * 329.03388 * 15 13 3 26 26 H 1.09003 * 109.60501 * 89.16872 * 15 13 3 27 27 H 1.08998 * 111.13330 * 283.52598 * 16 15 13 28 28 H 1.08994 * 111.16840 * 159.36494 * 16 15 13 29 29 H 1.08996 * 110.34430 * 242.49436 * 18 13 3 30 30 H 1.09006 * 110.33825 * 4.74476 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 -0.0888 5 6 1.4399 2.1874 -1.1644 6 1 0.7596 3.0075 -0.9880 7 6 1.7549 1.8185 -2.4550 8 7 2.5062 0.7612 -2.6719 9 14 1.1144 2.8205 -3.8956 10 1 0.2977 3.9518 -3.3874 11 1 2.2598 3.3489 -4.6792 12 1 0.2761 1.9569 -4.7654 13 6 1.6343 2.1268 1.3069 14 1 0.5504 2.0746 1.4102 15 6 2.0528 3.5967 1.2468 16 6 2.3440 4.0972 2.6862 17 16 3.2480 2.6531 3.3808 18 6 2.2828 1.3785 2.4826 19 1 -0.3633 -1.0238 -0.0897 20 1 -0.3633 0.4341 0.9314 21 1 -0.3634 0.5896 -0.8417 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 2.7282 0.5018 -3.5798 25 1 2.9502 3.6967 0.6363 26 1 1.2485 4.1883 0.8095 27 1 1.4191 4.2817 3.2327 28 1 2.9741 4.9864 2.6737 29 1 1.5161 0.9562 3.1321 30 1 2.9428 0.5931 2.1140 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938003.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:59 Heat of formation + Delta-G solvation = -40.167277 kcal Electronic energy + Delta-G solvation = -11535.633249 eV Core-core repulsion = 9648.431706 eV Total energy + Delta-G solvation = -1887.201544 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.94229 -34.99798 -33.21559 -30.19437 -28.85722 -25.60501 -25.09770 -21.95808 -20.15601 -18.21526 -17.57811 -16.70633 -15.92291 -15.32471 -14.95149 -14.49266 -14.25108 -13.86192 -13.48077 -12.97790 -12.82507 -12.72748 -12.54277 -12.32203 -12.25646 -11.75732 -11.54346 -11.28515 -10.92150 -10.62208 -10.55235 -10.34441 -8.64663 -8.02597 -6.11134 1.05377 1.40735 1.44746 1.49074 1.53384 2.46951 3.27550 3.87524 3.95930 4.21863 4.29949 4.45087 4.63633 4.68392 4.73777 4.78242 4.92798 5.00606 5.13770 5.30369 5.31435 5.48063 5.63624 5.71660 5.76754 5.99949 6.19474 6.44084 6.99081 7.54759 9.03476 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.011602 C = 0.010177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.869504 B = 2412.703909 C = 2750.701103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C 0.059 3.941 4 H -0.010 1.010 5 C -0.502 4.502 6 H 0.058 0.942 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.940 3.060 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.287 1.287 13 C -0.082 4.082 14 H 0.074 0.926 15 C -0.102 4.102 16 C -0.048 4.048 17 S -0.362 6.362 18 C -0.044 4.044 19 H 0.037 0.963 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.034 0.966 24 H 0.256 0.744 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 3.769 7.951 9.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.151 4.151 3 C 0.040 3.960 4 H 0.008 0.992 5 C -0.541 4.541 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.767 3.233 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.102 4.102 14 H 0.092 0.908 15 C -0.141 4.141 16 C -0.196 4.196 17 S -0.136 6.136 18 C -0.192 4.192 19 H 0.056 0.944 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.224 3.593 8.608 9.590 hybrid contribution -0.866 0.194 -1.987 2.176 sum -3.090 3.788 6.621 8.230 Atomic orbital electron populations 1.21536 0.96267 0.99282 1.00891 1.21474 0.95957 0.98772 0.98894 1.18734 0.93997 0.92298 0.90966 0.99153 1.21401 1.26415 1.15243 0.91027 0.92382 1.25616 0.95882 0.95786 1.01204 1.70054 1.39339 1.25953 1.20660 0.85781 0.77965 0.79317 0.80261 1.18736 1.21454 1.21380 1.21637 1.00148 0.93974 0.94453 0.90776 1.22240 1.02165 0.95120 0.94590 1.24442 1.01999 0.96227 0.96927 1.87560 1.53785 1.08080 1.64211 1.24072 1.00052 0.97551 0.97528 0.94433 0.92908 0.93896 0.93476 0.94783 0.93520 0.92673 0.90052 0.87646 0.86727 0.88457 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.32 71.98 0.67 -4.21 16 2 C -0.11 -5.07 5.30 30.59 0.16 -4.91 16 3 C 0.06 2.75 1.24 -11.54 -0.01 2.74 16 4 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 5 C -0.50 -25.41 6.17 25.60 0.16 -25.25 16 6 H 0.06 2.85 7.05 -2.91 -0.02 2.83 16 7 C 0.01 0.70 5.36 84.65 0.45 1.16 16 8 N -0.92 -52.29 11.58 21.45 0.25 -52.04 16 9 Si 0.94 42.47 29.54 68.60 2.03 44.50 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 13 C -0.08 -3.06 2.10 -10.57 -0.02 -3.08 16 14 H 0.07 2.65 6.50 -2.38 -0.02 2.64 16 15 C -0.10 -3.49 4.85 31.31 0.15 -3.34 16 16 C -0.05 -1.33 7.52 72.72 0.55 -0.79 16 17 S -0.36 -11.89 23.23 -56.49 -1.31 -13.20 16 18 C -0.04 -1.49 6.24 72.22 0.45 -1.04 16 19 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.05 1.83 6.74 -2.39 -0.02 1.81 16 21 H 0.04 1.89 6.88 -2.39 -0.02 1.87 16 22 H 0.05 2.46 6.44 -2.39 -0.02 2.44 16 23 H 0.03 1.37 6.47 -2.39 -0.02 1.36 16 24 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.05 2.17 7.81 -2.38 -0.02 2.15 16 26 H 0.08 2.67 7.66 -2.39 -0.02 2.65 16 27 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.10 2.86 8.14 -2.39 -0.02 2.85 16 30 H 0.08 3.06 6.59 -2.38 -0.02 3.05 16 Total: -1.00 -56.54 244.95 4.62 -51.92 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.10 Total: 7.55 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 2.56 Total: -38.72 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.25 Total: -52.04 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -11.89 SS G_CDS: -1.31 Total: -13.20 kcal Total: -56.54 4.62 -51.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938003.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.748 kcal (2) G-P(sol) polarization free energy of solvation -56.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds