Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47118 * 120.64784 * 2 1 4 4 C 1.53611 * 107.43917 * 222.32247 * 3 2 1 5 5 C 1.53024 * 108.45191 * 300.53097 * 4 3 2 6 6 N 1.45833 * 110.59791 * 49.45177 * 5 4 3 7 7 C 1.29282 * 123.75110 * 339.20387 * 6 5 4 8 8 S 1.76196 * 118.85895 * 180.98598 * 7 6 5 9 9 C 1.76196 * 100.00258 * 0.02562 * 8 7 6 10 10 H 1.08005 * 120.00044 * 0.02562 * 9 8 7 11 11 C 1.38809 * 120.00392 * 180.02562 * 9 8 7 12 12 N 1.31529 * 120.00129 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99584 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46664 * 90.00443 * 13 11 9 15 15 H 1.48493 * 109.47102 * 210.00102 * 13 11 9 16 16 H 1.48496 * 109.47170 * 330.00349 * 13 11 9 17 17 H 1.09007 * 109.47307 * 89.99915 * 1 2 3 18 18 H 1.08998 * 109.47073 * 209.99641 * 1 2 3 19 19 H 1.08996 * 109.47593 * 329.99961 * 1 2 3 20 20 H 1.09002 * 109.87439 * 102.81879 * 3 2 1 21 21 H 1.09002 * 109.87813 * 341.82864 * 3 2 1 22 22 H 1.09000 * 109.63799 * 60.22443 * 4 3 2 23 23 H 1.08996 * 109.63940 * 180.84216 * 4 3 2 24 24 H 1.09005 * 109.24743 * 169.73901 * 5 4 3 25 25 H 1.08994 * 109.25121 * 289.20154 * 5 4 3 26 26 H 0.97003 * 119.99417 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2149 1.2657 0.0000 4 6 3.3818 1.1094 -0.9867 5 6 4.2559 -0.0576 -0.5222 6 7 3.4380 -1.2328 -0.2455 7 6 2.1694 -1.1838 -0.0014 8 16 1.3110 -2.6836 0.3425 9 6 2.6403 -3.8331 0.2156 10 1 3.6350 -3.4845 -0.0202 11 6 2.4092 -5.1867 0.4185 12 7 3.4017 -6.0447 0.3243 13 14 0.6889 -5.7894 0.8270 14 1 -0.0352 -6.1081 -0.4297 15 1 0.7788 -7.0090 1.6694 16 1 -0.0442 -4.7304 1.5660 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 -0.8900 0.5138 19 1 -0.3634 0.8899 0.5138 20 1 2.5995 1.4685 0.9995 21 1 1.5660 2.0810 -0.3197 22 1 2.9932 0.9019 -1.9837 23 1 3.9723 2.0254 -1.0038 24 1 4.9785 -0.2980 -1.3021 25 1 4.7881 0.2307 0.3842 26 1 3.2400 -6.9906 0.4658 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = 21.640174 kcal Electronic energy + Delta-G solvation = -10891.900473 eV Core-core repulsion = 8903.838758 eV Total energy + Delta-G solvation = -1988.061715 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.068 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.50566 -33.43597 -32.38034 -31.46359 -27.07995 -25.57153 -23.70803 -23.05598 -18.82381 -17.59246 -15.90106 -15.35309 -14.97354 -14.75083 -13.95707 -13.48515 -12.95874 -12.82443 -12.29052 -12.07667 -11.59740 -11.58794 -11.09406 -10.90049 -10.67694 -10.25719 -9.91467 -8.97666 -8.75590 -8.16712 -7.54823 -6.90088 -6.20862 -3.98697 2.63505 3.22556 3.28420 3.36276 3.37448 3.77553 4.28520 4.68314 5.08036 5.15590 5.18735 5.34054 5.44982 5.70723 5.78547 5.82844 5.98281 6.02463 6.14747 6.40492 6.49299 7.25250 7.77696 8.05364 8.94448 9.09612 9.20685 10.88372 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.052388 B = 0.011936 C = 0.009890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.340460 B = 2345.231169 C = 2830.461085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.648 5.648 3 C 0.128 3.872 4 C -0.166 4.166 5 C 0.070 3.930 6 N -0.598 5.598 7 C 0.395 3.605 8 S -0.021 6.021 9 C -0.505 4.505 10 H 0.125 0.875 11 C 0.093 3.907 12 N -0.874 5.874 13 Si 0.844 3.156 14 H -0.266 1.266 15 H -0.271 1.271 16 H -0.241 1.241 17 H 0.044 0.956 18 H 0.075 0.925 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 12.296 -0.356 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.376 5.376 3 C 0.002 3.998 4 C -0.205 4.205 5 C -0.064 4.064 6 N -0.329 5.329 7 C 0.013 3.987 8 S 0.212 5.788 9 C -0.653 4.653 10 H 0.142 0.858 11 C -0.115 4.115 12 N -0.510 5.510 13 Si 0.669 3.331 14 H -0.191 1.191 15 H -0.196 1.196 16 H -0.165 1.165 17 H 0.062 0.938 18 H 0.094 0.906 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.135 11.378 -0.167 12.928 hybrid contribution 0.287 0.619 -0.173 0.704 sum -5.848 11.997 -0.340 13.351 Atomic orbital electron populations 1.21540 0.79903 1.02333 1.00832 1.47277 1.05106 1.03554 1.81622 1.21518 0.93565 0.86161 0.98581 1.22410 0.98205 1.00339 0.99590 1.21700 0.96177 0.88732 0.99791 1.71793 1.04681 1.27262 1.29173 1.24362 0.91469 0.90213 0.92684 1.82823 1.16520 0.94894 1.84570 1.22693 0.96972 0.91548 1.54118 0.85770 1.24744 0.96931 0.95646 0.94162 1.69881 1.31018 1.02728 1.47413 0.86989 0.85307 0.80793 0.80030 1.19120 1.19570 1.16503 0.93778 0.90618 0.92308 0.92792 0.90856 0.91591 0.91225 0.90931 0.92619 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.42 10.44 59.85 0.62 2.05 15 2 N -0.65 -11.62 3.25 -181.76 -0.59 -12.21 15 3 C 0.13 1.86 6.62 -3.39 -0.02 1.84 15 4 C -0.17 -2.48 6.25 -26.40 -0.16 -2.64 15 5 C 0.07 1.31 7.19 -4.39 -0.03 1.28 15 6 N -0.60 -14.36 8.66 -61.61 -0.53 -14.89 15 7 C 0.39 8.94 7.62 -88.84 -0.68 8.26 15 8 S -0.02 -0.51 17.64 -107.50 -1.90 -2.40 15 9 C -0.50 -14.89 9.77 30.94 0.30 -14.59 15 10 H 0.12 4.06 6.75 -52.48 -0.35 3.71 15 11 C 0.09 2.72 5.50 -17.47 -0.10 2.63 15 12 N -0.87 -26.63 13.96 55.49 0.77 -25.86 15 13 Si 0.84 20.52 27.74 -169.99 -4.71 15.80 15 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 16 H -0.24 -5.57 6.74 56.52 0.38 -5.19 15 17 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 18 H 0.08 1.17 6.42 -51.93 -0.33 0.84 15 19 H 0.06 0.66 8.09 -51.93 -0.42 0.24 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 0.84 8.03 -51.93 -0.42 0.43 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.07 1.33 8.14 -51.93 -0.42 0.90 15 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 LS Contribution 232.04 15.07 3.50 3.50 Total: -1.00 -32.16 232.04 -6.74 -38.91 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.22 Total: -1.66 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.06 Total: -1.18 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.35 Total: -52.96 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.71 Total: 15.80 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -1.90 Total: -2.40 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.16 -6.74 -38.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.546 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds