Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47118 * 120.64784 * 2 1 4 4 C 1.53611 * 107.43917 * 222.32247 * 3 2 1 5 5 C 1.53024 * 108.45191 * 300.53097 * 4 3 2 6 6 N 1.45833 * 110.59791 * 49.45177 * 5 4 3 7 7 C 1.29282 * 123.75110 * 339.20387 * 6 5 4 8 8 S 1.76196 * 118.85895 * 180.98598 * 7 6 5 9 9 C 1.76196 * 100.00258 * 0.02562 * 8 7 6 10 10 H 1.08005 * 120.00044 * 0.02562 * 9 8 7 11 11 C 1.38809 * 120.00392 * 180.02562 * 9 8 7 12 12 N 1.31529 * 120.00129 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99584 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46664 * 90.00443 * 13 11 9 15 15 H 1.48493 * 109.47102 * 210.00102 * 13 11 9 16 16 H 1.48496 * 109.47170 * 330.00349 * 13 11 9 17 17 H 1.09007 * 109.47307 * 89.99915 * 1 2 3 18 18 H 1.08998 * 109.47073 * 209.99641 * 1 2 3 19 19 H 1.08996 * 109.47593 * 329.99961 * 1 2 3 20 20 H 1.09002 * 109.87439 * 102.81879 * 3 2 1 21 21 H 1.09002 * 109.87813 * 341.82864 * 3 2 1 22 22 H 1.09000 * 109.63799 * 60.22443 * 4 3 2 23 23 H 1.08996 * 109.63940 * 180.84216 * 4 3 2 24 24 H 1.09005 * 109.24743 * 169.73901 * 5 4 3 25 25 H 1.08994 * 109.25121 * 289.20154 * 5 4 3 26 26 H 0.97003 * 119.99417 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2149 1.2657 0.0000 4 6 3.3818 1.1094 -0.9867 5 6 4.2559 -0.0576 -0.5222 6 7 3.4380 -1.2328 -0.2455 7 6 2.1694 -1.1838 -0.0014 8 16 1.3110 -2.6836 0.3425 9 6 2.6403 -3.8331 0.2156 10 1 3.6350 -3.4845 -0.0202 11 6 2.4092 -5.1867 0.4185 12 7 3.4017 -6.0447 0.3243 13 14 0.6889 -5.7894 0.8270 14 1 -0.0352 -6.1081 -0.4297 15 1 0.7788 -7.0090 1.6694 16 1 -0.0442 -4.7304 1.5660 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 -0.8900 0.5138 19 1 -0.3634 0.8899 0.5138 20 1 2.5995 1.4685 0.9995 21 1 1.5660 2.0810 -0.3197 22 1 2.9932 0.9019 -1.9837 23 1 3.9723 2.0254 -1.0038 24 1 4.9785 -0.2980 -1.3021 25 1 4.7881 0.2307 0.3842 26 1 3.2400 -6.9906 0.4658 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = -1.383471 kcal Electronic energy + Delta-G solvation = -10892.898853 eV Core-core repulsion = 8903.838758 eV Total energy + Delta-G solvation = -1989.060095 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.93780 -34.93101 -34.52718 -32.89419 -28.39701 -27.74069 -25.10019 -24.47836 -20.48416 -19.38988 -17.48540 -17.05031 -16.80911 -16.14196 -15.35902 -15.01969 -14.81030 -14.28480 -13.56902 -13.45692 -13.27147 -13.08437 -12.85448 -12.66122 -12.20632 -11.82692 -11.69790 -11.05977 -10.81262 -9.74136 -9.21467 -8.65336 -8.41354 -6.20638 0.85692 1.34999 1.42565 1.52660 1.58903 2.22986 2.34612 2.71285 2.95554 3.86704 3.96398 4.15635 4.32170 4.51265 4.59697 4.62619 4.74314 4.80247 4.96810 4.98924 5.19292 5.85391 5.95795 6.34888 6.55369 6.97763 7.48392 8.72002 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.052388 B = 0.011936 C = 0.009890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.340460 B = 2345.231169 C = 2830.461085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.647 5.647 3 C 0.122 3.878 4 C -0.155 4.155 5 C 0.061 3.939 6 N -0.655 5.655 7 C 0.389 3.611 8 S -0.002 6.002 9 C -0.531 4.531 10 H 0.075 0.925 11 C 0.036 3.964 12 N -0.922 5.922 13 Si 0.915 3.085 14 H -0.256 1.256 15 H -0.260 1.260 16 H -0.220 1.220 17 H 0.056 0.944 18 H 0.062 0.938 19 H 0.099 0.901 20 H 0.058 0.942 21 H 0.117 0.883 22 H 0.056 0.944 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 14.392 -0.095 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.374 5.374 3 C -0.002 4.002 4 C -0.194 4.194 5 C -0.071 4.071 6 N -0.387 5.387 7 C 0.005 3.995 8 S 0.231 5.769 9 C -0.679 4.679 10 H 0.093 0.907 11 C -0.168 4.168 12 N -0.561 5.561 13 Si 0.735 3.265 14 H -0.180 1.180 15 H -0.185 1.185 16 H -0.144 1.144 17 H 0.075 0.925 18 H 0.080 0.920 19 H 0.117 0.883 20 H 0.076 0.924 21 H 0.135 0.865 22 H 0.075 0.925 23 H 0.127 0.873 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.466 13.525 0.092 15.956 hybrid contribution 1.134 0.113 -0.295 1.178 sum -7.331 13.638 -0.203 15.485 Atomic orbital electron populations 1.21789 0.77729 1.03632 1.02054 1.47523 1.06593 1.03009 1.80254 1.21836 0.93919 0.85585 0.98850 1.22321 0.98168 1.00021 0.98933 1.21785 0.96278 0.89104 0.99977 1.71670 1.06112 1.30936 1.30000 1.24069 0.91672 0.91052 0.92692 1.82205 1.14330 0.94852 1.85562 1.22764 0.97234 0.93590 1.54353 0.90708 1.25787 1.01918 0.95530 0.93585 1.70017 1.33970 1.03400 1.48669 0.85919 0.79247 0.80842 0.80492 1.18020 1.18453 1.14369 0.92549 0.91974 0.88280 0.92361 0.86473 0.92476 0.87292 0.91542 0.92201 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.30 10.44 127.77 1.33 3.63 15 2 N -0.65 -21.47 3.25 -728.96 -2.37 -23.84 15 3 C 0.12 3.08 6.62 86.47 0.57 3.66 15 4 C -0.15 -4.20 6.25 30.81 0.19 -4.00 15 5 C 0.06 2.30 7.19 86.51 0.62 2.92 15 6 N -0.65 -32.07 8.66 -348.84 -3.02 -35.09 15 7 C 0.39 17.46 7.62 179.73 1.37 18.83 15 8 S 0.00 -0.11 17.64 -56.49 -1.00 -1.11 15 9 C -0.53 -32.46 9.77 67.96 0.66 -31.79 15 10 H 0.07 5.21 6.75 -2.91 -0.02 5.19 15 11 C 0.04 2.15 5.50 84.87 0.47 2.62 15 12 N -0.92 -58.21 13.96 21.64 0.30 -57.90 15 13 Si 0.91 42.38 27.74 68.60 1.90 44.28 15 14 H -0.26 -11.37 7.11 99.48 0.71 -10.66 15 15 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 16 H -0.22 -9.40 6.74 99.48 0.67 -8.73 15 17 H 0.06 1.31 8.14 -2.38 -0.02 1.29 15 18 H 0.06 1.75 6.42 -2.39 -0.02 1.73 15 19 H 0.10 1.73 8.09 -2.39 -0.02 1.71 15 20 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.12 2.00 8.03 -2.39 -0.02 1.98 15 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.11 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.07 2.48 8.14 -2.38 -0.02 2.46 15 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.28 15.92 8.31 -92.71 -0.77 15.15 15 Total: -1.00 -73.33 232.04 2.16 -71.17 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.12 Total: 6.62 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.22 Total: -4.14 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -5.09 Total: -116.83 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.90 Total: 44.28 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.00 Total: -1.11 kcal Total: -73.33 2.16 -71.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.790 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds