Wall clock time and date at job start Mon Mar 30 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 102.99839 * 2 1 4 4 C 1.50698 * 109.47125 * 55.77394 * 3 2 1 5 5 H 1.07996 * 120.00145 * 238.73811 * 4 3 2 6 6 C 1.37872 * 120.00115 * 58.74456 * 4 3 2 7 7 N 1.31519 * 120.00056 * 354.39884 * 6 4 3 8 8 Si 1.86801 * 120.00416 * 174.40347 * 6 4 3 9 9 H 1.48500 * 109.46849 * 59.99585 * 8 6 4 10 10 H 1.48500 * 109.47557 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46921 * 299.99855 * 8 6 4 12 12 C 1.53001 * 109.47012 * 295.77466 * 3 2 1 13 13 C 1.52994 * 109.47238 * 179.97438 * 12 3 2 14 14 C 1.53006 * 109.46899 * 60.00042 * 13 12 3 15 15 C 1.52993 * 109.47347 * 299.99981 * 14 13 12 16 16 C 1.52997 * 109.47207 * 175.77563 * 3 2 1 17 17 H 1.08994 * 109.47294 * 61.17185 * 1 2 3 18 18 H 1.09006 * 109.46945 * 181.16580 * 1 2 3 19 19 H 1.08998 * 109.47507 * 301.16311 * 1 2 3 20 20 H 0.97000 * 120.00087 * 179.97438 * 7 6 4 21 21 H 1.09004 * 109.47027 * 300.00181 * 12 3 2 22 22 H 1.09000 * 109.46925 * 60.00056 * 12 3 2 23 23 H 1.09001 * 109.47498 * 300.00622 * 13 12 3 24 24 H 1.09000 * 109.47503 * 180.02562 * 13 12 3 25 25 H 1.09002 * 109.47116 * 179.97438 * 14 13 12 26 26 H 1.09000 * 109.47307 * 60.00583 * 14 13 12 27 27 H 1.09004 * 109.46953 * 299.99950 * 15 14 13 28 28 H 1.09000 * 109.47131 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.47676 * 300.00151 * 16 3 2 30 30 H 1.09004 * 109.47059 * 59.99680 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.5563 2.4367 1.1748 5 1 0.8653 3.2506 1.0123 6 6 1.8295 2.0101 2.4570 7 7 2.5838 0.9502 2.6507 8 14 1.1284 2.9372 3.9193 9 1 -0.3548 2.9277 3.8464 10 1 1.5659 2.2810 5.1776 11 1 1.6162 4.3396 3.8963 12 6 1.7255 2.4055 -1.2990 13 6 2.0690 3.8964 -1.2988 14 6 3.5854 4.0703 -1.1922 15 6 4.0819 3.4324 0.1067 16 6 3.7384 1.9409 0.1063 17 1 -0.3633 0.4955 -0.9002 18 1 -0.3633 -1.0275 0.0209 19 1 -0.3634 0.5318 0.8793 20 1 2.7763 0.6502 3.5528 21 1 2.2070 1.9214 -2.1487 22 1 0.6452 2.2820 -1.3747 23 1 1.5873 4.3802 -0.4491 24 1 1.7149 4.3511 -2.2240 25 1 3.8302 5.1325 -1.1925 26 1 4.0672 3.5867 -2.0419 27 1 3.6001 3.9162 0.9564 28 1 5.1623 3.5559 0.1824 29 1 4.0922 1.4864 1.0316 30 1 4.2198 1.4568 -0.7435 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260073425.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:03 Heat of formation + Delta-G solvation = -38.221021 kcal Electronic energy + Delta-G solvation = -11857.636490 eV Core-core repulsion = 9970.519342 eV Total energy + Delta-G solvation = -1887.117148 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.26000 -34.59351 -31.70598 -31.06637 -29.25941 -26.90321 -23.12770 -22.85750 -20.47662 -17.92113 -16.86946 -16.55861 -15.55609 -15.00085 -14.85699 -14.62977 -14.02261 -13.96071 -13.53529 -13.19488 -12.79630 -12.67897 -12.48234 -12.34606 -12.14439 -11.79060 -11.46742 -11.17981 -10.81907 -10.71547 -10.46762 -9.80381 -8.33595 -7.39184 -6.11013 1.40637 1.45373 1.50061 1.68526 2.45072 2.52070 3.40928 4.16883 4.21561 4.36803 4.55874 4.59683 4.71040 4.80293 4.92726 4.94989 5.00613 5.03302 5.09538 5.21293 5.32434 5.52749 5.57273 5.66600 5.72365 5.79911 6.06268 6.32276 6.82719 7.50271 9.00080 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.019992 C = 0.014893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.096981 B = 1400.247367 C = 1879.648034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 S -0.377 6.377 3 C 0.132 3.868 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.036 3.964 7 N -0.852 5.852 8 Si 0.932 3.068 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.271 1.271 12 C -0.094 4.094 13 C -0.103 4.103 14 C -0.107 4.107 15 C -0.097 4.097 16 C -0.082 4.082 17 H 0.066 0.934 18 H 0.086 0.914 19 H 0.053 0.947 20 H 0.254 0.746 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 4.455 -5.273 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 S -0.144 6.144 3 C 0.025 3.975 4 C -0.552 4.552 5 H 0.073 0.927 6 C -0.170 4.170 7 N -0.487 5.487 8 Si 0.759 3.241 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.196 1.196 12 C -0.134 4.134 13 C -0.143 4.143 14 C -0.144 4.144 15 C -0.136 4.136 16 C -0.122 4.122 17 H 0.085 0.915 18 H 0.105 0.895 19 H 0.072 0.928 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.006 3.337 -5.151 6.137 hybrid contribution -1.201 1.022 1.236 2.004 sum -1.195 4.359 -3.914 5.979 Atomic orbital electron populations 1.22840 0.94674 1.03900 1.03236 1.86104 1.07827 1.23394 1.97123 1.20202 0.95217 0.86989 0.95058 1.21124 1.26130 1.17424 0.90519 0.92680 1.25492 0.95861 0.94984 1.00707 1.70317 1.35879 1.21694 1.20832 0.86028 0.78717 0.79511 0.79866 1.20399 1.21604 1.19611 1.21712 0.99050 0.96361 0.96286 1.21451 0.96531 0.95207 1.01066 1.21449 0.95638 1.00312 0.97009 1.21366 0.98805 0.95036 0.98392 1.21160 0.95310 0.96241 0.99465 0.91499 0.89494 0.92752 0.93596 0.93296 0.94003 0.92710 0.91268 0.90976 0.92206 0.93057 0.92782 0.92899 0.95670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.25 10.04 113.37 1.14 -2.11 16 2 S -0.38 -18.50 19.63 -56.49 -1.11 -19.61 16 3 C 0.13 6.19 0.40 -11.54 0.00 6.18 16 4 C -0.51 -25.67 5.17 25.60 0.13 -25.54 16 5 H 0.06 2.77 6.67 -2.91 -0.02 2.75 16 6 C 0.04 1.88 5.11 84.65 0.43 2.31 16 7 N -0.85 -46.90 10.25 21.45 0.22 -46.68 16 8 Si 0.93 41.79 29.54 68.60 2.03 43.82 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 C -0.09 -3.77 4.59 30.59 0.14 -3.63 16 13 C -0.10 -3.57 5.70 30.59 0.17 -3.40 16 14 C -0.11 -3.47 5.92 30.59 0.18 -3.29 16 15 C -0.10 -3.80 5.70 30.61 0.17 -3.62 16 16 C -0.08 -3.77 4.54 30.61 0.14 -3.63 16 17 H 0.07 2.52 7.17 -2.39 -0.02 2.51 16 18 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 19 H 0.05 2.45 7.63 -2.39 -0.02 2.43 16 20 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 21 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.04 1.67 6.91 -2.39 -0.02 1.65 16 23 H 0.05 2.05 6.59 -2.39 -0.02 2.04 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 2.21 7.22 -2.39 -0.02 2.20 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 2.80 6.39 -2.39 -0.02 2.79 16 30 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -56.05 241.81 4.74 -51.31 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.09 Total: 7.89 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 2.51 Total: -36.72 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.22 Total: -46.68 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: -18.50 SS G_CDS: -1.11 Total: -19.61 kcal Total: -56.05 4.74 -51.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260073425.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.086 kcal (2) G-P(sol) polarization free energy of solvation -56.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds