Wall clock time and date at job start Mon Mar 30 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47021 * 2 1 4 4 C 1.50694 * 109.47334 * 120.00329 * 2 1 3 5 5 H 1.07999 * 120.00529 * 84.92897 * 4 2 1 6 6 C 1.37886 * 120.00044 * 264.93266 * 4 2 1 7 7 N 1.31512 * 120.00085 * 179.50034 * 6 4 2 8 8 Si 1.86798 * 119.99825 * 359.49434 * 6 4 2 9 9 H 1.48498 * 109.47335 * 269.05836 * 8 6 4 10 10 H 1.48505 * 109.46922 * 29.05911 * 8 6 4 11 11 H 1.48502 * 109.47020 * 149.05518 * 8 6 4 12 12 C 1.50700 * 109.47058 * 240.00310 * 2 1 3 13 13 S 1.75875 * 125.19755 * 299.69640 * 12 2 1 14 14 C 1.75873 * 90.99367 * 179.97438 * 13 12 2 15 15 C 1.33423 * 109.61607 * 0.29068 * 14 13 12 16 16 C 1.33470 * 125.20105 * 119.99599 * 12 2 1 17 17 F 1.35109 * 122.55425 * 359.94673 * 16 12 2 18 18 H 1.09004 * 109.46849 * 54.87686 * 1 2 3 19 19 H 1.08995 * 109.47247 * 174.87898 * 1 2 3 20 20 H 1.09005 * 109.46630 * 294.88130 * 1 2 3 21 21 H 0.96999 * 120.00145 * 179.97438 * 7 6 4 22 22 H 1.08008 * 125.19184 * 180.02562 * 14 13 12 23 23 H 1.07998 * 122.55540 * 179.79696 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.1345 -1.7856 1.2293 6 6 2.3616 0.0122 2.3576 7 7 2.7907 -0.6087 3.4346 8 14 2.1984 1.8730 2.3548 9 1 3.4803 2.4817 1.9173 10 1 1.1158 2.2735 1.4205 11 1 1.8692 2.3431 3.7245 12 6 2.0323 -0.7103 -1.2305 13 16 1.6989 -2.3880 -1.6396 14 6 2.6449 -2.2481 -3.1157 15 6 3.1410 -1.0134 -3.2143 16 6 2.8028 -0.1641 -2.1736 17 9 3.2209 1.1194 -2.1174 18 1 -0.3633 0.5913 -0.8406 19 1 -0.3633 -1.0235 -0.0917 20 1 -0.3633 0.4324 0.9324 21 1 3.0227 -0.1003 4.2275 22 1 2.8038 -3.0417 -3.8308 23 1 3.7589 -0.6999 -4.0427 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260121876.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:19 Heat of formation + Delta-G solvation = -23.291036 kcal Electronic energy + Delta-G solvation = -10695.853490 eV Core-core repulsion = 8550.090356 eV Total energy + Delta-G solvation = -2145.763134 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.09387 -37.01588 -34.32322 -31.63830 -27.85483 -25.26334 -23.55337 -20.61842 -19.15596 -17.18319 -16.63009 -15.78176 -14.98458 -14.31219 -13.95706 -13.55230 -12.73338 -12.52723 -12.23960 -12.05100 -11.44199 -11.16662 -10.86599 -10.73126 -10.48097 -10.00517 -9.80597 -9.22008 -8.64273 -8.02027 -7.72650 -6.16359 -4.17659 1.48646 2.09943 2.52050 3.04257 3.27104 3.34747 3.37513 4.35905 4.98403 5.16536 5.47946 5.74080 5.98676 6.15524 6.28755 6.40637 6.59667 6.71076 6.94198 7.08000 7.25137 7.59448 8.37901 8.85682 9.44031 10.95848 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.042073 B = 0.013824 C = 0.012246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.351225 B = 2025.002696 C = 2285.933212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.066 3.934 3 H 0.053 0.947 4 C -0.513 4.513 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.261 1.261 11 H -0.285 1.285 12 C -0.139 4.139 13 S 0.152 5.848 14 C -0.236 4.236 15 C -0.150 4.150 16 C 0.027 3.973 17 F -0.138 7.138 18 H 0.027 0.973 19 H 0.047 0.953 20 H 0.054 0.946 21 H 0.266 0.734 22 H 0.163 0.837 23 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 -0.918 -10.712 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 H 0.071 0.929 4 C -0.550 4.550 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.185 1.185 11 H -0.211 1.211 12 C -0.258 4.258 13 S 0.414 5.586 14 C -0.372 4.372 15 C -0.182 4.182 16 C -0.003 4.003 17 F -0.117 7.117 18 H 0.046 0.954 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.181 0.819 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.736 -2.018 -9.844 10.415 hybrid contribution 1.045 2.301 -0.549 2.586 sum -1.691 0.284 -10.393 10.533 Atomic orbital electron populations 1.22067 0.97375 1.00260 0.99733 1.17969 0.92838 0.95695 0.88970 0.92863 1.20911 1.44489 0.95482 0.94158 0.90193 1.24994 0.93951 0.98387 0.95290 1.69880 1.43818 1.36069 1.03168 0.86917 0.79532 0.86223 0.77503 1.19939 1.18493 1.21148 1.25203 1.02413 0.97720 1.00473 1.84173 1.50317 1.08779 1.15281 1.25309 1.07740 1.00696 1.03430 1.19863 1.04441 0.93741 1.00190 1.16342 1.04700 0.81214 0.97996 1.91419 1.89086 1.34602 1.96588 0.95386 0.93401 0.92659 0.92393 0.81896 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.11 37.16 0.34 -2.55 14 2 C 0.07 1.58 2.24 -92.93 -0.21 1.37 14 3 H 0.05 1.33 4.89 -51.93 -0.25 1.08 14 4 C -0.51 -14.20 8.77 -34.44 -0.30 -14.50 14 5 H 0.08 2.37 7.93 -52.49 -0.42 1.95 14 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 14 7 N -0.89 -26.88 13.96 55.43 0.77 -26.11 14 8 Si 0.87 21.49 26.87 -169.99 -4.57 16.92 14 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 14 10 H -0.26 -6.12 6.72 56.52 0.38 -5.74 14 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 14 12 C -0.14 -3.01 5.09 -35.98 -0.18 -3.19 14 13 S 0.15 2.72 22.77 -107.50 -2.45 0.27 14 14 C -0.24 -3.59 11.23 29.05 0.33 -3.27 14 15 C -0.15 -2.51 10.19 -41.16 -0.42 -2.93 14 16 C 0.03 0.55 7.32 -41.14 -0.30 0.25 14 17 F -0.14 -2.95 16.81 2.25 0.04 -2.91 14 18 H 0.03 0.52 8.14 -51.93 -0.42 0.10 14 19 H 0.05 0.95 7.84 -51.93 -0.41 0.55 14 20 H 0.05 1.18 7.97 -51.93 -0.41 0.77 14 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 14 22 H 0.16 1.87 8.06 -52.48 -0.42 1.45 14 23 H 0.14 1.93 8.06 -52.49 -0.42 1.50 14 LS Contribution 221.95 15.07 3.34 3.34 Total: -1.00 -29.64 221.95 -5.62 -35.26 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: -1.92 Total: -4.06 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -0.85 Total: -22.73 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.77 Total: -26.11 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.57 Total: 16.92 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.45 Total: 0.27 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.64 -5.62 -35.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121876.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.972 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds