Wall clock time and date at job start Mon Mar 30 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28933 * 126.46573 * 2 1 4 4 N 1.28571 * 109.64323 * 179.86833 * 3 2 1 5 5 C 1.33429 * 109.88969 * 0.41007 * 4 3 2 6 6 S 1.76198 * 126.26884 * 179.77666 * 5 4 3 7 7 C 1.81402 * 103.00015 * 359.97438 * 6 5 4 8 8 C 1.50701 * 109.47281 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99741 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99649 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99519 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00538 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47212 * 90.00201 * 12 10 8 14 14 H 1.48500 * 109.47446 * 210.00134 * 12 10 8 15 15 H 1.48506 * 109.46984 * 330.00381 * 12 10 8 16 16 N 1.31733 * 107.46766 * 359.75518 * 5 4 3 17 17 H 1.09001 * 109.47060 * 269.68858 * 1 2 3 18 18 H 1.09004 * 109.47073 * 29.68347 * 1 2 3 19 19 H 1.09000 * 109.47212 * 149.68429 * 1 2 3 20 20 H 1.09003 * 109.47260 * 300.00302 * 7 6 5 21 21 H 1.09004 * 109.47302 * 59.99770 * 7 6 5 22 22 H 0.96996 * 119.99756 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2314 1.0369 0.0000 4 7 3.4621 0.6648 0.0028 5 6 3.5335 -0.6676 -0.0042 6 16 5.0078 -1.6324 -0.0093 7 6 6.3171 -0.3768 -0.0034 8 6 7.6631 -1.0546 -0.0064 9 1 7.7247 -2.1328 -0.0118 10 6 8.8158 -0.2981 -0.0023 11 7 9.9904 -0.8897 -0.0054 12 14 8.7093 1.5668 0.0062 13 1 8.6803 2.0545 1.4085 14 1 9.8919 2.1334 -0.6906 15 1 7.4708 1.9950 -0.6925 16 7 2.2998 -1.1297 -0.0062 17 1 -0.3633 -0.0056 1.0277 18 1 -0.3633 0.8928 -0.5089 19 1 -0.3634 -0.8871 -0.5187 20 1 6.2235 0.2499 -0.8903 21 1 6.2239 0.2412 0.8896 22 1 10.8014 -0.3575 -0.0029 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154687.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:13 Heat of formation + Delta-G solvation = 122.059921 kcal Electronic energy + Delta-G solvation = -10205.176128 eV Core-core repulsion = 8117.928596 eV Total energy + Delta-G solvation = -2087.247531 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.043 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.75302 -34.49602 -33.12606 -32.43323 -29.51361 -28.41126 -23.68342 -22.75350 -22.19976 -17.97068 -16.95135 -16.73016 -16.17034 -14.33802 -13.96891 -13.76533 -13.75389 -13.24206 -12.80629 -12.41058 -11.84894 -10.97734 -10.91893 -10.68565 -10.64027 -10.25121 -10.20491 -9.84542 -9.32598 -8.75520 -7.16542 -6.23820 -4.29090 1.16757 1.45545 2.34741 2.43588 3.14445 3.26621 3.34880 3.39332 4.25001 4.30790 4.78115 4.99145 5.05484 5.08836 5.31539 5.81920 6.30716 6.60640 6.64398 7.31290 8.18993 8.39705 8.73289 9.30931 10.87173 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.069957 B = 0.008732 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.149222 B = 3205.701263 C = 3585.403950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.217 5.217 3 N -0.007 5.007 4 N -0.307 5.307 5 C 0.180 3.820 6 S 0.028 5.972 7 C 0.023 3.977 8 C -0.524 4.524 9 H 0.086 0.914 10 C 0.087 3.913 11 N -0.886 5.886 12 Si 0.875 3.125 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.259 1.259 16 N -0.301 5.301 17 H 0.092 0.908 18 H 0.104 0.896 19 H 0.104 0.896 20 H 0.052 0.948 21 H 0.047 0.953 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 2.509 -0.075 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.131 5.131 3 N -0.002 5.002 4 N -0.186 5.186 5 C -0.210 4.210 6 S 0.254 5.746 7 C -0.126 4.126 8 C -0.564 4.564 9 H 0.104 0.896 10 C -0.119 4.119 11 N -0.523 5.523 12 Si 0.701 3.299 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.183 1.183 16 N -0.147 5.147 17 H 0.110 0.890 18 H 0.122 0.878 19 H 0.123 0.877 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.495 1.875 -0.081 16.601 hybrid contribution -0.010 1.897 0.048 1.898 sum -16.505 3.773 -0.033 16.930 Atomic orbital electron populations 1.22151 0.70473 1.05915 1.04984 1.53509 1.09757 1.01142 1.48676 1.78230 0.96754 1.15146 1.10067 1.75708 1.09383 1.10786 1.22702 1.28286 0.99742 0.93373 0.99578 1.85875 0.88038 1.10715 1.89945 1.21830 0.94136 0.95221 1.01437 1.20319 0.86193 0.95609 1.54270 0.89578 1.24766 0.94655 0.98840 0.93600 1.69849 0.97522 1.36257 1.48673 0.86827 0.78565 0.85307 0.79209 1.19674 1.20728 1.18318 1.78928 0.99454 1.07850 1.28496 0.88961 0.87769 0.87747 0.93010 0.93481 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.81 11.78 59.85 0.70 1.51 14 2 N -0.22 -3.25 4.75 -16.63 -0.08 -3.33 14 3 N -0.01 -0.12 13.24 60.35 0.80 0.68 14 4 N -0.31 -6.37 11.92 30.16 0.36 -6.01 14 5 C 0.18 3.67 8.44 -90.78 -0.77 2.90 14 6 S 0.03 0.60 22.08 -107.50 -2.37 -1.77 14 7 C 0.02 0.55 4.42 36.01 0.16 0.71 14 8 C -0.52 -14.53 9.68 -34.44 -0.33 -14.87 14 9 H 0.09 2.55 7.96 -52.49 -0.42 2.13 14 10 C 0.09 2.46 5.47 -17.82 -0.10 2.36 14 11 N -0.89 -26.20 13.96 55.43 0.77 -25.43 14 12 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 14 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 14 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 14 15 H -0.26 -6.10 6.54 56.52 0.37 -5.73 14 16 N -0.30 -5.48 12.79 30.17 0.39 -5.09 14 17 H 0.09 0.52 8.14 -51.93 -0.42 0.10 14 18 H 0.10 0.54 8.14 -51.93 -0.42 0.12 14 19 H 0.10 0.61 8.14 -51.93 -0.42 0.19 14 20 H 0.05 1.26 7.20 -51.92 -0.37 0.89 14 21 H 0.05 1.14 7.57 -51.92 -0.39 0.74 14 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 14 LS Contribution 222.21 15.07 3.35 3.35 Total: -1.00 -31.96 222.21 -3.41 -35.37 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -1.62 Total: -6.74 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.33 Total: -7.39 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 2.24 Total: -39.18 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.37 Total: -1.77 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.96 -3.41 -35.37 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154687.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.426 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds