Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28933 * 126.46573 * 2 1 4 4 N 1.28571 * 109.64323 * 179.86833 * 3 2 1 5 5 C 1.33429 * 109.88969 * 0.41007 * 4 3 2 6 6 S 1.76198 * 126.26884 * 179.77666 * 5 4 3 7 7 C 1.81402 * 103.00015 * 359.97438 * 6 5 4 8 8 C 1.50701 * 109.47281 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99741 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99649 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99519 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00538 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47212 * 90.00201 * 12 10 8 14 14 H 1.48500 * 109.47446 * 210.00134 * 12 10 8 15 15 H 1.48506 * 109.46984 * 330.00381 * 12 10 8 16 16 N 1.31733 * 107.46766 * 359.75518 * 5 4 3 17 17 H 1.09001 * 109.47060 * 269.68858 * 1 2 3 18 18 H 1.09004 * 109.47073 * 29.68347 * 1 2 3 19 19 H 1.09000 * 109.47212 * 149.68429 * 1 2 3 20 20 H 1.09003 * 109.47260 * 300.00302 * 7 6 5 21 21 H 1.09004 * 109.47302 * 59.99770 * 7 6 5 22 22 H 0.96996 * 119.99756 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2314 1.0369 0.0000 4 7 3.4621 0.6648 0.0028 5 6 3.5335 -0.6676 -0.0042 6 16 5.0078 -1.6324 -0.0093 7 6 6.3171 -0.3768 -0.0034 8 6 7.6631 -1.0546 -0.0064 9 1 7.7247 -2.1328 -0.0118 10 6 8.8158 -0.2981 -0.0023 11 7 9.9904 -0.8897 -0.0054 12 14 8.7093 1.5668 0.0062 13 1 8.6803 2.0545 1.4085 14 1 9.8919 2.1334 -0.6906 15 1 7.4708 1.9950 -0.6925 16 7 2.2998 -1.1297 -0.0062 17 1 -0.3633 -0.0056 1.0277 18 1 -0.3633 0.8928 -0.5089 19 1 -0.3634 -0.8871 -0.5187 20 1 6.2235 0.2499 -0.8903 21 1 6.2239 0.2412 0.8896 22 1 10.8014 -0.3575 -0.0029 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154687.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = 98.603970 kcal Electronic energy + Delta-G solvation = -10206.193254 eV Core-core repulsion = 8117.928596 eV Total energy + Delta-G solvation = -2088.264658 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.043 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -44.13937 -35.68032 -35.24265 -33.84991 -31.54730 -29.44671 -25.29589 -24.32536 -23.77507 -19.47291 -18.88349 -18.01703 -17.60026 -16.31232 -15.50809 -15.38127 -14.93426 -14.46064 -14.35011 -14.09850 -13.03569 -12.80878 -12.70792 -12.27196 -12.20282 -12.03402 -11.80835 -11.45056 -11.23730 -10.88438 -8.82603 -8.39058 -6.50050 -0.17713 -0.05539 0.92637 1.20574 1.33387 1.37571 1.44783 1.52132 2.30322 2.94651 3.13874 3.65552 4.21675 4.28108 4.48641 4.61046 4.64379 4.68312 5.18469 5.25279 6.01667 6.53253 6.99929 7.13891 8.75460 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.069957 B = 0.008732 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.149222 B = 3205.701263 C = 3585.403950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.188 5.188 3 N -0.008 5.008 4 N -0.345 5.345 5 C 0.166 3.834 6 S 0.033 5.967 7 C 0.026 3.974 8 C -0.533 4.533 9 H 0.053 0.947 10 C 0.035 3.965 11 N -0.929 5.929 12 Si 0.940 3.060 13 H -0.262 1.262 14 H -0.273 1.273 15 H -0.251 1.251 16 N -0.303 5.303 17 H 0.121 0.879 18 H 0.134 0.866 19 H 0.127 0.873 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 3.808 -0.041 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.105 5.105 3 N -0.003 5.003 4 N -0.222 5.222 5 C -0.225 4.225 6 S 0.259 5.741 7 C -0.123 4.123 8 C -0.573 4.573 9 H 0.071 0.929 10 C -0.168 4.168 11 N -0.567 5.567 12 Si 0.763 3.237 13 H -0.187 1.187 14 H -0.198 1.198 15 H -0.175 1.175 16 N -0.151 5.151 17 H 0.139 0.861 18 H 0.153 0.847 19 H 0.145 0.855 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.917 3.180 -0.046 19.182 hybrid contribution 0.451 1.415 0.041 1.486 sum -18.466 4.595 -0.006 19.029 Atomic orbital electron populations 1.22964 0.66169 1.08601 1.07661 1.54098 1.11709 0.99672 1.44975 1.78144 0.96235 1.15456 1.10472 1.75653 1.11050 1.10978 1.24519 1.27940 0.99790 0.93501 1.01228 1.85666 0.88059 1.09455 1.90941 1.21543 0.93745 0.95773 1.01246 1.20479 0.88346 0.94427 1.54008 0.92854 1.25648 0.94167 1.03896 0.93039 1.69967 0.98448 1.38358 1.49960 0.85802 0.79028 0.79164 0.79753 1.18695 1.19806 1.17463 1.78848 0.99011 1.09255 1.27950 0.86128 0.84741 0.85494 0.93154 0.93329 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 11.78 127.77 1.50 2.40 14 2 N -0.19 -5.04 4.75 -206.52 -0.98 -6.02 14 3 N -0.01 -0.27 13.24 37.02 0.49 0.22 14 4 N -0.34 -13.83 11.92 -58.49 -0.70 -14.53 14 5 C 0.17 6.59 8.44 180.41 1.52 8.11 14 6 S 0.03 1.41 22.08 -56.49 -1.25 0.16 14 7 C 0.03 1.27 4.42 71.24 0.32 1.58 14 8 C -0.53 -30.21 9.68 25.60 0.25 -29.96 14 9 H 0.05 3.29 7.96 -2.91 -0.02 3.27 14 10 C 0.03 1.96 5.47 84.65 0.46 2.42 14 11 N -0.93 -55.95 13.96 21.45 0.30 -55.65 14 12 Si 0.94 43.22 27.47 68.60 1.88 45.10 14 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 14 14 H -0.27 -12.07 7.11 99.48 0.71 -11.37 14 15 H -0.25 -11.13 6.54 99.48 0.65 -10.48 14 16 N -0.30 -10.39 12.79 -58.47 -0.75 -11.14 14 17 H 0.12 0.77 8.14 -2.39 -0.02 0.75 14 18 H 0.13 0.73 8.14 -2.38 -0.02 0.71 14 19 H 0.13 0.89 8.14 -2.39 -0.02 0.87 14 20 H 0.05 2.44 7.20 -2.39 -0.02 2.43 14 21 H 0.05 2.33 7.57 -2.39 -0.02 2.31 14 22 H 0.28 15.31 8.31 -92.71 -0.77 14.54 14 Total: -1.00 -69.40 222.21 4.23 -65.17 By element: Atomic # 1 Polarization: -9.05 SS G_CDS: 1.18 Total: -7.88 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 4.05 Total: -15.45 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -1.64 Total: -87.12 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.25 Total: 0.16 kcal Total: -69.40 4.23 -65.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154687.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.775 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds