Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86808 * 119.99858 * 2 1 4 4 H 1.48508 * 109.46717 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99923 * 3 2 1 6 6 H 1.48500 * 109.47203 * 150.00292 * 3 2 1 7 7 C 1.38630 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00068 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.42901 * 117.00233 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.63859 * 328.31668 * 10 9 7 12 12 C 1.55156 * 110.72234 * 204.97501 * 10 9 7 13 13 C 1.54908 * 101.58197 * 206.13560 * 12 10 9 14 14 N 1.47422 * 104.83357 * 37.01425 * 13 12 10 15 15 C 1.34774 * 125.65171 * 155.91447 * 14 13 12 16 16 N 1.34773 * 119.99833 * 359.94872 * 15 14 13 17 17 O 1.21585 * 119.99981 * 179.97438 * 15 14 13 18 18 C 1.47031 * 108.70136 * 335.86884 * 14 13 12 19 19 H 0.96999 * 119.99870 * 359.97438 * 1 2 3 20 20 H 1.08999 * 111.00338 * 324.21501 * 12 10 9 21 21 H 1.09000 * 110.99867 * 88.02150 * 12 10 9 22 22 H 1.09000 * 110.36459 * 155.84880 * 13 12 10 23 23 H 1.09001 * 110.36573 * 278.06223 * 13 12 10 24 24 H 0.97008 * 119.99989 * 359.97438 * 16 15 14 25 25 H 0.97001 * 120.00246 * 179.97438 * 16 15 14 26 26 H 1.08998 * 109.88059 * 241.64343 * 18 14 13 27 27 H 1.08994 * 109.87878 * 120.47623 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4002 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4403 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3345 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0017 11 1 3.0496 -3.4167 -0.5381 12 6 1.3080 -4.7442 -0.6143 13 6 1.9712 -5.9648 0.0713 14 7 2.2686 -5.5120 1.4424 15 6 2.4147 -6.3098 2.5188 16 7 2.2877 -7.6453 2.3898 17 8 2.6606 -5.8246 3.6062 18 6 2.3805 -4.0460 1.4409 19 1 -0.4850 0.8400 0.0004 20 1 0.2525 -4.6741 -0.3517 21 1 1.4375 -4.7847 -1.6958 22 1 1.2820 -6.8090 0.0918 23 1 2.8900 -6.2384 -0.4474 24 1 2.0908 -8.0323 1.5224 25 1 2.3933 -8.2196 3.1644 26 1 3.3832 -3.7505 1.7494 27 1 1.6409 -3.6171 2.1170 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156416.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -60.638084 kcal Electronic energy + Delta-G solvation = -12864.669796 eV Core-core repulsion = 10430.287357 eV Total energy + Delta-G solvation = -2434.382439 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.83396 -37.51355 -35.34665 -33.44414 -31.73906 -30.11880 -27.93283 -24.64129 -23.12615 -20.55619 -19.69707 -18.04917 -17.71810 -16.70499 -15.94844 -15.07008 -14.54575 -14.28627 -13.79860 -13.33411 -12.71485 -12.46868 -12.21942 -11.72713 -11.59632 -11.16070 -10.90946 -10.40209 -10.10067 -10.02782 -9.66232 -9.58511 -9.22485 -8.28092 -8.04837 -5.99281 -3.64453 3.00252 3.30500 3.34034 3.37770 3.42449 4.27403 4.37703 4.93791 5.10521 5.23950 5.42302 5.52849 5.63948 5.86622 6.21481 6.35212 6.36812 6.51879 6.63497 6.78078 6.96655 7.14982 7.44179 8.11377 8.38278 8.81774 9.44038 10.06968 11.21091 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.060719 B = 0.008085 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.031268 B = 3462.239925 C = 3693.360610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.026 3.974 3 Si 0.926 3.074 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.368 4.368 8 H 0.066 0.934 9 O -0.274 6.274 10 C 0.091 3.909 11 H 0.058 0.942 12 C -0.128 4.128 13 C 0.102 3.898 14 N -0.630 5.630 15 C 0.719 3.281 16 N -0.870 5.870 17 O -0.596 6.596 18 C 0.102 3.898 19 H 0.259 0.741 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.394 0.606 25 H 0.411 0.589 26 H 0.060 0.940 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -12.945 -1.714 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.173 4.173 3 Si 0.753 3.247 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.447 4.447 8 H 0.083 0.917 9 O -0.188 6.188 10 C 0.030 3.970 11 H 0.076 0.924 12 C -0.166 4.166 13 C -0.021 4.021 14 N -0.370 5.370 15 C 0.420 3.580 16 N -0.439 5.439 17 O -0.475 6.475 18 C -0.022 4.022 19 H 0.069 0.931 20 H 0.103 0.897 21 H 0.101 0.899 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.222 0.778 25 H 0.242 0.758 26 H 0.078 0.922 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.867 -12.355 -0.995 12.984 hybrid contribution 0.632 0.300 -0.105 0.708 sum 4.499 -12.055 -1.100 12.914 Atomic orbital electron populations 1.70019 1.05445 1.26108 1.51335 1.24960 0.95664 0.97804 0.98846 0.85956 0.78785 0.81934 0.78048 1.20677 1.20853 1.19921 1.20890 0.90287 0.82498 1.51019 0.91655 1.85738 1.30872 1.10068 1.92078 1.22725 0.94449 0.88133 0.91718 0.92435 1.22802 1.01206 0.92749 0.99835 1.22267 0.99232 0.97926 0.82659 1.47555 1.74234 1.08101 1.07069 1.15486 0.78053 0.81200 0.83294 1.42977 1.80319 1.05958 1.14612 1.90953 1.56874 1.74401 1.25266 1.22662 1.01758 0.76776 1.00971 0.93095 0.89724 0.89902 0.91315 0.91676 0.77788 0.75751 0.92169 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.68 55.48 0.76 -26.75 15 2 C 0.03 0.76 5.49 -17.51 -0.10 0.66 15 3 Si 0.93 21.90 29.55 -169.99 -5.02 16.88 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.37 -10.54 9.82 30.88 0.30 -10.24 15 8 H 0.07 1.76 7.69 -52.49 -0.40 1.35 15 9 O -0.27 -7.57 9.51 -16.50 -0.16 -7.72 15 10 C 0.09 1.89 3.45 -24.90 -0.09 1.80 15 11 H 0.06 1.15 7.90 -51.93 -0.41 0.74 15 12 C -0.13 -2.07 6.81 -24.58 -0.17 -2.24 15 13 C 0.10 1.33 6.57 -2.53 -0.02 1.31 15 14 N -0.63 -10.70 3.33 -176.24 -0.59 -11.28 15 15 C 0.72 12.35 8.76 -86.92 -0.76 11.59 15 16 N -0.87 -9.72 8.83 27.63 0.24 -9.48 15 17 O -0.60 -13.02 17.51 5.29 0.09 -12.93 15 18 C 0.10 2.08 6.64 -3.06 -0.02 2.06 15 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 21 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.07 0.69 7.30 -51.93 -0.38 0.31 15 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.39 3.19 7.31 -40.82 -0.30 2.89 15 25 H 0.41 3.85 8.93 -40.82 -0.36 3.49 15 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 27 H 0.08 1.81 8.06 -51.93 -0.42 1.39 15 LS Contribution 239.32 15.07 3.61 3.61 Total: -1.00 -35.63 239.32 -5.01 -40.64 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.10 Total: 2.09 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.84 Total: 4.95 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.42 Total: -47.51 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -35.63 -5.01 -40.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156416.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.002 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds