Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86808 * 119.99858 * 2 1 4 4 H 1.48508 * 109.46717 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99923 * 3 2 1 6 6 H 1.48500 * 109.47203 * 150.00292 * 3 2 1 7 7 C 1.38630 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00068 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.42901 * 117.00233 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.63859 * 328.31668 * 10 9 7 12 12 C 1.55156 * 110.72234 * 204.97501 * 10 9 7 13 13 C 1.54908 * 101.58197 * 206.13560 * 12 10 9 14 14 N 1.47422 * 104.83357 * 37.01425 * 13 12 10 15 15 C 1.34774 * 125.65171 * 155.91447 * 14 13 12 16 16 N 1.34773 * 119.99833 * 359.94872 * 15 14 13 17 17 O 1.21585 * 119.99981 * 179.97438 * 15 14 13 18 18 C 1.47031 * 108.70136 * 335.86884 * 14 13 12 19 19 H 0.96999 * 119.99870 * 359.97438 * 1 2 3 20 20 H 1.08999 * 111.00338 * 324.21501 * 12 10 9 21 21 H 1.09000 * 110.99867 * 88.02150 * 12 10 9 22 22 H 1.09000 * 110.36459 * 155.84880 * 13 12 10 23 23 H 1.09001 * 110.36573 * 278.06223 * 13 12 10 24 24 H 0.97008 * 119.99989 * 359.97438 * 16 15 14 25 25 H 0.97001 * 120.00246 * 179.97438 * 16 15 14 26 26 H 1.08998 * 109.88059 * 241.64343 * 18 14 13 27 27 H 1.08994 * 109.87878 * 120.47623 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4002 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4403 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3345 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0017 11 1 3.0496 -3.4167 -0.5381 12 6 1.3080 -4.7442 -0.6143 13 6 1.9712 -5.9648 0.0713 14 7 2.2686 -5.5120 1.4424 15 6 2.4147 -6.3098 2.5188 16 7 2.2877 -7.6453 2.3898 17 8 2.6606 -5.8246 3.6062 18 6 2.3805 -4.0460 1.4409 19 1 -0.4850 0.8400 0.0004 20 1 0.2525 -4.6741 -0.3517 21 1 1.4375 -4.7847 -1.6958 22 1 1.2820 -6.8090 0.0918 23 1 2.8900 -6.2384 -0.4474 24 1 2.0908 -8.0323 1.5224 25 1 2.3933 -8.2196 3.1644 26 1 3.3832 -3.7505 1.7494 27 1 1.6409 -3.6171 2.1170 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156416.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -90.106717 kcal Electronic energy + Delta-G solvation = -12865.947652 eV Core-core repulsion = 10430.287357 eV Total energy + Delta-G solvation = -2435.660295 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.21177 -39.13747 -37.11088 -34.71191 -33.80924 -31.55324 -29.43926 -26.75895 -24.52959 -22.04763 -21.06837 -19.76570 -19.28498 -17.95083 -17.63897 -16.73373 -16.01561 -15.87364 -15.44747 -14.93912 -14.30788 -14.14913 -13.84015 -13.43705 -13.12238 -12.76625 -12.69113 -12.12206 -11.83430 -11.51796 -11.47278 -11.16315 -10.75966 -10.19135 -9.64003 -8.18153 -5.87924 1.40880 1.47135 1.56112 1.70323 2.07993 2.34137 3.14215 3.32144 3.66412 3.68369 3.84829 4.19819 4.34075 4.55924 4.67371 4.82177 4.88997 5.11616 5.14408 5.19740 5.32918 5.95765 5.98412 6.20694 6.93428 7.25496 7.58522 8.02214 9.06208 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.060719 B = 0.008085 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.031268 B = 3462.239925 C = 3693.360610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.003 2.997 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.378 4.378 8 H 0.076 0.924 9 O -0.316 6.316 10 C 0.078 3.922 11 H 0.069 0.931 12 C -0.121 4.121 13 C 0.109 3.891 14 N -0.633 5.633 15 C 0.713 3.287 16 N -0.837 5.837 17 O -0.652 6.652 18 C 0.112 3.888 19 H 0.261 0.739 20 H 0.065 0.935 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.414 0.586 25 H 0.423 0.577 26 H 0.051 0.949 27 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -14.421 -2.828 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.233 4.233 3 Si 0.825 3.175 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.094 0.906 9 O -0.231 6.231 10 C 0.018 3.982 11 H 0.087 0.913 12 C -0.159 4.159 13 C -0.013 4.013 14 N -0.372 5.372 15 C 0.413 3.587 16 N -0.408 5.408 17 O -0.534 6.534 18 C -0.013 4.013 19 H 0.069 0.931 20 H 0.084 0.916 21 H 0.127 0.873 22 H 0.128 0.872 23 H 0.117 0.883 24 H 0.246 0.754 25 H 0.257 0.743 26 H 0.070 0.930 27 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.025 -13.928 -2.154 14.963 hybrid contribution 0.279 0.618 0.240 0.719 sum 5.305 -13.311 -1.914 14.456 Atomic orbital electron populations 1.70187 1.07554 1.27240 1.53334 1.26185 0.96696 1.01974 0.98489 0.84796 0.77580 0.76396 0.78734 1.19163 1.20729 1.18536 1.21388 0.90916 0.83390 1.49953 0.90646 1.85668 1.33351 1.11592 1.92441 1.23088 0.95479 0.87304 0.92348 0.91332 1.22822 0.99631 0.91899 1.01551 1.22541 1.01481 0.97323 0.79920 1.47497 1.74319 1.06470 1.08905 1.15736 0.77870 0.82732 0.82354 1.42632 1.78266 1.03546 1.16323 1.90918 1.59275 1.75811 1.27431 1.22236 0.99796 0.79438 0.99799 0.93073 0.91646 0.87263 0.87210 0.88278 0.75381 0.74317 0.93015 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.68 21.61 0.30 -59.52 15 2 C -0.04 -2.36 5.49 84.82 0.47 -1.89 15 3 Si 1.00 45.20 29.55 68.60 2.03 47.23 15 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 15 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 7 C -0.38 -22.02 9.82 67.91 0.67 -21.35 15 8 H 0.08 4.08 7.69 -2.91 -0.02 4.05 15 9 O -0.32 -17.95 9.51 -81.94 -0.78 -18.73 15 10 C 0.08 3.23 3.45 31.78 0.11 3.34 15 11 H 0.07 2.68 7.90 -2.39 -0.02 2.66 15 12 C -0.12 -3.69 6.81 31.99 0.22 -3.48 15 13 C 0.11 2.40 6.57 86.86 0.57 2.97 15 14 N -0.63 -20.53 3.33 -829.76 -2.76 -23.29 15 15 C 0.71 23.43 8.76 179.06 1.57 24.99 15 16 N -0.84 -15.95 8.83 -184.75 -1.63 -17.58 15 17 O -0.65 -28.62 17.51 -3.98 -0.07 -28.69 15 18 C 0.11 4.70 6.64 86.73 0.58 5.27 15 19 H 0.26 15.49 8.31 -92.71 -0.77 14.72 15 20 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 21 H 0.11 2.75 8.14 -2.39 -0.02 2.73 15 22 H 0.11 1.59 7.30 -2.39 -0.02 1.58 15 23 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.41 4.73 7.31 -92.70 -0.68 4.06 15 25 H 0.42 6.62 8.93 -92.71 -0.83 5.79 15 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.03 1.68 8.06 -2.39 -0.02 1.66 15 Total: -1.00 -81.22 239.32 0.95 -80.27 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -0.31 Total: 10.46 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 4.18 Total: 9.86 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -4.10 Total: -100.39 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.85 Total: -47.42 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -81.22 0.95 -80.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156416.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.837 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds