Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00157 * 2 1 4 4 C 1.50701 * 109.46933 * 269.99830 * 3 2 1 5 5 H 1.07999 * 120.00091 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99559 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00343 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99684 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47128 * 90.00067 * 8 6 4 10 10 H 1.48501 * 109.46996 * 210.00305 * 8 6 4 11 11 H 1.48501 * 109.46999 * 329.99823 * 8 6 4 12 12 C 1.38381 * 119.99920 * 179.97438 * 2 1 3 13 13 N 1.31760 * 127.92759 * 179.67834 * 12 2 1 14 14 N 1.26404 * 117.48767 * 180.26555 * 13 12 2 15 15 N 1.28566 * 119.31008 * 359.97438 * 14 13 12 16 16 S 1.70144 * 105.25965 * 0.02562 * 15 14 13 17 17 H 1.09007 * 109.46929 * 269.99992 * 1 2 3 18 18 H 1.08999 * 109.47105 * 29.99689 * 1 2 3 19 19 H 1.08998 * 109.47025 * 149.99953 * 1 2 3 20 20 H 1.08997 * 109.46978 * 29.99831 * 3 2 1 21 21 H 1.09000 * 109.47165 * 149.99828 * 3 2 1 22 22 H 0.97000 * 120.00001 * 179.97438 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6732 8 14 3.4369 3.4175 -3.4339 9 1 2.3066 4.2601 -3.9002 10 1 4.6970 4.2007 -3.4966 11 1 3.5543 2.2204 -4.3049 12 6 2.1569 -1.1984 0.0005 13 7 3.4619 -1.3802 -0.0052 14 7 3.8851 -2.5713 -0.0086 15 7 3.0394 -3.5396 -0.0058 16 16 1.5085 -2.7972 0.0014 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 0.8900 -0.5138 19 1 -0.3633 -0.8900 -0.5138 20 1 1.6085 2.0283 0.5138 21 1 3.1500 1.1384 0.5139 22 1 4.0303 4.4439 -0.8504 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159324.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = 89.324547 kcal Electronic energy + Delta-G solvation = -10585.251093 eV Core-core repulsion = 8496.584049 eV Total energy + Delta-G solvation = -2088.667044 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.043 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.55200 -37.05757 -32.95095 -31.70458 -28.36755 -27.49304 -24.70237 -22.96168 -20.03539 -19.15749 -16.88061 -16.60146 -15.54314 -15.01386 -14.11409 -13.86869 -13.33271 -12.55413 -12.42886 -11.95916 -11.50513 -11.25542 -10.85023 -10.81830 -10.60441 -10.31068 -9.79644 -9.64029 -9.58176 -8.65514 -7.59452 -6.26439 -4.35044 0.75085 1.05269 1.90803 2.86667 3.17882 3.19360 3.27254 3.32576 4.26838 4.94690 5.08060 5.29122 5.45259 5.48510 5.79854 6.40494 6.97454 7.21277 7.47435 7.67468 7.87221 8.66751 9.15536 9.31754 10.80608 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.048776 B = 0.010357 C = 0.009608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.915310 B = 2702.764296 C = 2913.476629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.510 5.510 3 C 0.243 3.757 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.331 3.669 13 N -0.359 5.359 14 N 0.019 4.981 15 N -0.285 5.285 16 S 0.107 5.893 17 H 0.066 0.934 18 H 0.097 0.903 19 H 0.067 0.933 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 -5.660 1.393 9.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.222 5.222 3 C 0.123 3.877 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.047 4.047 13 N -0.228 5.228 14 N 0.023 4.977 15 N -0.275 5.275 16 S 0.226 5.774 17 H 0.084 0.916 18 H 0.115 0.885 19 H 0.086 0.914 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.167 -6.435 1.448 9.740 hybrid contribution 0.035 1.226 -0.986 1.574 sum -7.132 -5.209 0.462 8.844 Atomic orbital electron populations 1.22077 0.77402 1.04337 1.02355 1.47071 1.05917 1.02794 1.66401 1.19864 0.92884 0.76103 0.98823 1.21297 1.38173 1.07035 0.91377 0.92075 1.24903 0.94724 0.96024 0.97896 1.69905 1.37403 1.14271 1.31001 0.86407 0.77890 0.78734 0.83940 1.20451 1.20809 1.19741 1.27238 0.91065 0.93671 0.92755 1.72341 1.08714 1.11843 1.29901 1.75151 1.26159 0.91567 1.04870 1.82861 0.92382 1.19818 1.32479 1.85231 1.22340 0.97811 1.72040 0.91595 0.88465 0.91417 0.93285 0.92662 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.49 59.85 0.63 1.74 14 2 N -0.51 -9.80 2.96 -184.32 -0.54 -10.35 14 3 C 0.24 5.67 5.34 -5.19 -0.03 5.65 14 4 C -0.54 -14.03 9.39 -34.44 -0.32 -14.36 14 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 14 6 C 0.07 1.82 5.46 -17.82 -0.10 1.72 14 7 N -0.89 -24.59 13.29 55.43 0.74 -23.85 14 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 14 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 14 12 C 0.33 6.60 8.02 -86.18 -0.69 5.91 14 13 N -0.36 -8.14 11.19 30.38 0.34 -7.80 14 14 N 0.02 0.41 12.76 60.35 0.77 1.18 14 15 N -0.29 -5.58 13.44 60.35 0.81 -4.77 14 16 S 0.11 1.79 22.83 -107.50 -2.45 -0.67 14 17 H 0.07 0.74 8.14 -51.93 -0.42 0.32 14 18 H 0.10 1.29 8.07 -51.93 -0.42 0.87 14 19 H 0.07 0.80 7.27 -51.93 -0.38 0.42 14 20 H 0.05 1.13 8.07 -51.93 -0.42 0.71 14 21 H 0.06 1.44 7.75 -51.93 -0.40 1.04 14 22 H 0.27 7.03 8.31 -40.82 -0.34 6.69 14 LS Contribution 221.44 15.07 3.34 3.34 Total: -1.00 -28.97 221.44 -4.12 -33.10 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: -1.59 Total: -6.54 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.51 Total: 0.67 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 2.11 Total: -45.59 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.45 Total: -0.67 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.97 -4.12 -33.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159324.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.422 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds