Wall clock time and date at job start Mon Mar 30 2020 03:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53003 * 109.63039 * 59.60720 * 3 2 1 5 5 O 1.43755 * 109.63234 * 299.37065 * 3 2 1 6 6 C 1.44783 * 104.81268 * 215.80625 * 5 3 2 7 7 C 1.54920 * 101.72443 * 36.10195 * 6 5 3 8 8 H 1.08995 * 110.69715 * 82.83440 * 7 6 5 9 9 C 1.53001 * 110.84396 * 205.97169 * 7 6 5 10 10 C 1.50697 * 109.47290 * 180.19219 * 9 7 6 11 11 H 1.08008 * 119.99645 * 0.02562 * 10 9 7 12 12 C 1.37874 * 120.00195 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00103 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00060 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47261 * 60.00104 * 14 12 10 16 16 H 1.48502 * 109.47484 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47122 * 300.00210 * 14 12 10 18 18 O 1.43369 * 109.63645 * 180.02562 * 3 2 1 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09006 * 109.46651 * 60.00050 * 4 3 2 25 25 H 1.08995 * 109.47573 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47374 * 300.00536 * 4 3 2 27 27 H 1.08995 * 110.98120 * 277.98840 * 6 5 3 28 28 H 1.09008 * 110.97974 * 154.20753 * 6 5 3 29 29 H 1.08999 * 109.46802 * 300.19391 * 9 7 6 30 30 H 1.09008 * 109.47094 * 60.19164 * 9 7 6 31 31 H 0.96998 * 120.00227 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5239 2.1701 1.2431 5 8 1.5749 2.1192 -1.1799 6 6 2.6607 3.0013 -1.5530 7 6 3.9002 2.1476 -1.1857 8 1 4.1346 1.4449 -1.9853 9 6 5.1053 3.0400 -0.8822 10 6 6.2925 2.1795 -0.5340 11 1 6.1971 1.1037 -0.5301 12 6 7.5007 2.7656 -0.2215 13 7 7.6171 4.0756 -0.2268 14 14 8.9725 1.6991 0.2094 15 1 9.2911 0.8090 -0.9359 16 1 10.1425 2.5651 0.5029 17 1 8.6541 0.8750 1.4030 18 8 3.4737 1.4466 -0.0006 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8816 1.6598 2.1374 25 1 1.8882 3.1974 1.2403 26 1 0.4339 2.1716 1.2370 27 1 2.6339 3.9216 -0.9697 28 1 2.6385 3.2174 -2.6212 29 1 5.3394 3.6447 -1.7583 30 1 4.8711 3.6933 -0.0416 31 1 8.4672 4.4879 -0.0073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:59 Heat of formation + Delta-G solvation = -109.225437 kcal Electronic energy + Delta-G solvation = -13441.719489 eV Core-core repulsion = 11108.770488 eV Total energy + Delta-G solvation = -2332.949001 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.02208 -34.73586 -34.10375 -32.86779 -30.37443 -28.53323 -26.53469 -24.05627 -23.19607 -20.55356 -20.03534 -16.69401 -16.18098 -16.01830 -15.02446 -14.60580 -14.07558 -13.45455 -13.34340 -12.76890 -12.54530 -12.01787 -11.96473 -11.80450 -11.71830 -11.26664 -11.19626 -11.01445 -10.77232 -10.49389 -10.46556 -9.67632 -9.50420 -9.11051 -8.78424 -8.37805 -6.00675 -4.01516 3.35700 3.39126 3.43052 4.00421 4.45556 4.49104 5.11295 5.14134 5.34953 5.39145 5.45869 5.54562 5.68217 5.75607 5.79119 5.87545 6.06506 6.13176 6.18421 6.25261 6.42049 6.47746 6.53183 6.80736 7.42781 7.61252 7.89419 7.97237 8.38121 9.02459 9.61540 11.11028 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.054554 B = 0.008745 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.128093 B = 3200.938520 C = 3426.555888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.248 3.752 4 C -0.169 4.169 5 O -0.384 6.384 6 C 0.016 3.984 7 C 0.063 3.937 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.511 4.511 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 O -0.361 6.361 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 -4.215 -0.133 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C 0.170 3.830 4 C -0.227 4.227 5 O -0.305 6.305 6 C -0.060 4.060 7 C 0.006 3.994 8 H 0.088 0.912 9 C -0.013 4.013 10 C -0.549 4.549 11 H 0.076 0.924 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 O -0.282 6.282 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.474 -4.194 -0.043 12.217 hybrid contribution 0.953 -0.344 0.220 1.036 sum -10.522 -4.538 0.177 11.460 Atomic orbital electron populations 1.21741 0.95042 1.01279 1.02337 1.21794 0.96263 0.94884 1.03215 1.23278 0.81556 0.92060 0.86077 1.22383 1.01119 1.01472 0.97732 1.89111 1.39863 1.56775 1.44723 1.24532 0.85583 0.94297 1.01609 1.24042 0.95391 0.93337 0.86640 0.91192 1.19260 0.90118 0.94084 0.97831 1.21071 0.94375 0.93222 1.46222 0.92369 1.24996 0.98937 0.94976 0.95592 1.69940 1.25576 1.08926 1.49419 0.86603 0.81833 0.80230 0.79029 1.20252 1.21318 1.20184 1.89006 1.17259 1.77477 1.44449 0.92866 0.92533 0.92054 0.90442 0.91193 0.91142 0.91919 0.91280 0.91059 0.88276 0.94883 0.95557 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.42 37.16 0.35 -1.44 16 2 C -0.12 -1.86 5.59 -26.73 -0.15 -2.01 16 3 C 0.25 4.41 1.14 -26.73 -0.03 4.38 16 4 C -0.17 -2.65 8.83 37.16 0.33 -2.32 16 5 O -0.38 -6.88 10.36 -59.04 -0.61 -7.49 16 6 C 0.02 0.29 7.36 38.17 0.28 0.57 16 7 C 0.06 1.36 3.61 -25.72 -0.09 1.27 16 8 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 9 C 0.02 0.62 4.76 -27.88 -0.13 0.49 16 10 C -0.51 -14.70 8.95 -34.44 -0.31 -15.01 16 11 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 14 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 O -0.36 -7.96 10.40 -59.04 -0.61 -8.58 16 19 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 20 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 21 H 0.06 0.78 7.70 -51.93 -0.40 0.38 16 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 0.92 6.44 -51.93 -0.33 0.58 16 27 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 28 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 257.99 15.07 3.89 3.89 Total: -1.00 -30.75 257.99 -6.31 -37.06 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.83 Total: -3.07 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 0.15 Total: -12.56 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.23 Total: -16.07 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.75 -6.31 -37.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.164 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds