Wall clock time and date at job start Mon Mar 30 2020 03:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53003 * 109.63039 * 59.60720 * 3 2 1 5 5 O 1.43755 * 109.63234 * 299.37065 * 3 2 1 6 6 C 1.44783 * 104.81268 * 215.80625 * 5 3 2 7 7 C 1.54920 * 101.72443 * 36.10195 * 6 5 3 8 8 H 1.08995 * 110.69715 * 82.83440 * 7 6 5 9 9 C 1.53001 * 110.84396 * 205.97169 * 7 6 5 10 10 C 1.50697 * 109.47290 * 180.19219 * 9 7 6 11 11 H 1.08008 * 119.99645 * 0.02562 * 10 9 7 12 12 C 1.37874 * 120.00195 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00103 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00060 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47261 * 60.00104 * 14 12 10 16 16 H 1.48502 * 109.47484 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47122 * 300.00210 * 14 12 10 18 18 O 1.43369 * 109.63645 * 180.02562 * 3 2 1 19 19 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09006 * 109.46651 * 60.00050 * 4 3 2 25 25 H 1.08995 * 109.47573 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47374 * 300.00536 * 4 3 2 27 27 H 1.08995 * 110.98120 * 277.98840 * 6 5 3 28 28 H 1.09008 * 110.97974 * 154.20753 * 6 5 3 29 29 H 1.08999 * 109.46802 * 300.19391 * 9 7 6 30 30 H 1.09008 * 109.47094 * 60.19164 * 9 7 6 31 31 H 0.96998 * 120.00227 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5239 2.1701 1.2431 5 8 1.5749 2.1192 -1.1799 6 6 2.6607 3.0013 -1.5530 7 6 3.9002 2.1476 -1.1857 8 1 4.1346 1.4449 -1.9853 9 6 5.1053 3.0400 -0.8822 10 6 6.2925 2.1795 -0.5340 11 1 6.1971 1.1037 -0.5301 12 6 7.5007 2.7656 -0.2215 13 7 7.6171 4.0756 -0.2268 14 14 8.9725 1.6991 0.2094 15 1 9.2911 0.8090 -0.9359 16 1 10.1425 2.5651 0.5029 17 1 8.6541 0.8750 1.4030 18 8 3.4737 1.4466 -0.0006 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8816 1.6598 2.1374 25 1 1.8882 3.1974 1.2403 26 1 0.4339 2.1716 1.2370 27 1 2.6339 3.9216 -0.9697 28 1 2.6385 3.2174 -2.6212 29 1 5.3394 3.6447 -1.7583 30 1 4.8711 3.6933 -0.0416 31 1 8.4672 4.4879 -0.0073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:58 Heat of formation + Delta-G solvation = -128.793044 kcal Electronic energy + Delta-G solvation = -13442.568004 eV Core-core repulsion = 11108.770488 eV Total energy + Delta-G solvation = -2333.797516 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51809 -36.37038 -35.52067 -34.81552 -32.14906 -29.85503 -28.34640 -25.28614 -25.06621 -22.36794 -21.37527 -18.55970 -18.07143 -17.43542 -16.70488 -16.21487 -15.62858 -15.08316 -14.61316 -14.28196 -14.08668 -13.68782 -13.55971 -13.29772 -13.14090 -13.00510 -12.71480 -12.45634 -12.39695 -12.22497 -11.92977 -11.61170 -11.18858 -10.95864 -10.60189 -10.36437 -8.22338 -6.31416 1.38717 1.41833 1.49897 2.40033 2.54592 3.04566 3.15037 3.74130 3.86733 3.92239 4.07564 4.29280 4.36469 4.52380 4.55066 4.62616 4.72810 4.75766 4.99708 5.02016 5.08027 5.09856 5.29016 5.32847 5.45121 5.55398 5.73683 6.16935 6.35341 6.79875 7.36110 8.89388 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.054554 B = 0.008745 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.128093 B = 3200.938520 C = 3426.555888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.234 3.766 4 C -0.167 4.167 5 O -0.381 6.381 6 C 0.025 3.975 7 C 0.064 3.936 8 H 0.070 0.930 9 C 0.030 3.970 10 C -0.534 4.534 11 H 0.052 0.948 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.963 3.037 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.272 1.272 18 O -0.391 6.391 19 H 0.074 0.926 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.022 0.978 30 H -0.001 1.001 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.305 -5.238 0.005 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.157 3.843 4 C -0.224 4.224 5 O -0.302 6.302 6 C -0.051 4.051 7 C 0.007 3.993 8 H 0.088 0.912 9 C -0.007 4.007 10 C -0.572 4.572 11 H 0.071 0.929 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.787 3.213 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.198 1.198 18 O -0.313 6.313 19 H 0.093 0.907 20 H 0.087 0.913 21 H 0.073 0.927 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.040 0.960 30 H 0.017 0.983 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.269 -5.222 0.090 13.335 hybrid contribution 1.161 -0.019 0.193 1.178 sum -11.108 -5.241 0.284 12.286 Atomic orbital electron populations 1.21707 0.92532 1.02846 1.02591 1.21829 0.98359 0.92783 1.03108 1.23747 0.79648 0.94099 0.86788 1.22394 1.02819 1.00319 0.96916 1.89108 1.39430 1.56742 1.44903 1.24473 0.83771 0.93517 1.03334 1.23800 0.95442 0.93324 0.86703 0.91234 1.19079 0.91484 0.94004 0.96113 1.21427 0.95805 0.93335 1.46616 0.92928 1.25886 1.01994 0.96335 0.95283 1.70052 1.26514 1.10568 1.50030 0.85532 0.78121 0.78570 0.79028 1.19077 1.20411 1.19760 1.88957 1.20179 1.77603 1.44589 0.90732 0.91343 0.92652 0.89898 0.92046 0.90643 0.93345 0.88479 0.91019 0.85465 0.95958 0.98259 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.42 71.98 0.68 -2.32 16 2 C -0.12 -3.48 5.59 30.59 0.17 -3.31 16 3 C 0.23 8.05 1.14 30.59 0.04 8.09 16 4 C -0.17 -4.98 8.83 71.98 0.64 -4.34 16 5 O -0.38 -13.04 10.36 -126.22 -1.31 -14.35 16 6 C 0.03 0.89 7.36 72.64 0.53 1.42 16 7 C 0.06 2.81 3.61 31.25 0.11 2.92 16 8 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16 9 C 0.03 1.61 4.76 29.85 0.14 1.75 16 10 C -0.53 -31.25 8.95 25.60 0.23 -31.02 16 11 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 12 C 0.00 0.17 5.46 84.65 0.46 0.63 16 13 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 14 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 O -0.39 -17.34 10.40 -126.22 -1.31 -18.65 16 19 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 20 H 0.07 1.30 6.43 -2.39 -0.02 1.29 16 21 H 0.05 1.26 7.70 -2.39 -0.02 1.24 16 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 27 H 0.07 2.51 8.05 -2.39 -0.02 2.49 16 28 H 0.13 3.72 8.14 -2.38 -0.02 3.70 16 29 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.00 -0.06 8.14 -2.38 -0.02 -0.07 16 31 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -65.60 257.99 3.78 -61.82 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.08 Total: 6.48 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.00 Total: -26.18 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -2.62 Total: -33.00 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.60 3.78 -61.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.973 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds