Wall clock time and date at job start Mon Mar 30 2020 02:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99592 * 2 1 4 4 O 1.20820 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.50691 * 119.99608 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.46409 * 324.08574 * 5 3 2 7 7 C 1.54482 * 110.62690 * 201.39970 * 5 3 2 8 8 O 1.44430 * 104.80380 * 217.32031 * 7 5 3 9 9 C 1.44785 * 105.29426 * 40.54333 * 8 7 5 10 10 C 1.54472 * 104.63063 * 319.46495 * 9 8 7 11 11 H 1.08995 * 110.51247 * 265.29532 * 10 9 8 12 12 C 1.50706 * 110.51406 * 142.72323 * 10 9 8 13 13 H 1.07996 * 119.99784 * 247.90623 * 12 10 9 14 14 C 1.37877 * 119.99757 * 67.89416 * 12 10 9 15 15 N 1.31512 * 120.00238 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99714 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46642 * 90.00612 * 16 14 12 18 18 H 1.48502 * 109.47205 * 210.00265 * 16 14 12 19 19 H 1.48491 * 109.47208 * 330.00722 * 16 14 12 20 20 H 1.08997 * 109.47430 * 60.00258 * 1 2 3 21 21 H 1.09003 * 109.46819 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47320 * 299.99735 * 1 2 3 23 23 H 1.08993 * 110.37356 * 336.15183 * 7 5 3 24 24 H 1.09000 * 110.37122 * 98.49102 * 7 5 3 25 25 H 1.09004 * 110.48583 * 200.67100 * 9 8 7 26 26 H 1.09002 * 110.42444 * 78.22592 * 9 8 7 27 27 H 0.96997 * 120.00355 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9898 0.4691 0.5999 7 6 4.0390 2.6478 0.5280 8 8 5.1930 2.9747 -0.2765 9 6 4.8490 2.5654 -1.6220 10 6 4.1119 1.2196 -1.4439 11 1 4.8051 0.3863 -1.5587 12 6 2.9798 1.1027 -2.4318 13 1 1.9571 1.1134 -2.0849 14 6 3.2498 0.9825 -3.7785 15 7 4.4951 0.9692 -4.2010 16 14 1.8465 0.8369 -5.0030 17 1 1.4443 2.1920 -5.4581 18 1 2.2899 0.0338 -6.1708 19 1 0.6901 0.1693 -4.3535 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.2579 3.3958 0.3926 24 1 4.3176 2.5749 1.5793 25 1 5.7493 2.4286 -2.2211 26 1 4.1910 3.2998 -2.0865 27 1 4.6851 0.8850 -5.1484 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227722.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:42 Heat of formation + Delta-G solvation = -136.384680 kcal Electronic energy + Delta-G solvation = -13494.444456 eV Core-core repulsion = 11024.484647 eV Total energy + Delta-G solvation = -2469.959809 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07276 -37.95964 -35.64191 -33.30556 -31.20475 -28.39456 -27.18547 -24.74643 -22.96072 -21.05642 -19.33110 -17.49284 -16.45316 -16.03500 -15.38105 -15.03672 -14.42482 -14.11446 -13.96047 -12.85375 -12.73176 -12.36419 -11.77038 -11.54678 -11.14863 -11.01692 -10.73765 -10.62842 -10.17767 -10.09861 -9.78440 -9.62075 -9.08975 -8.81423 -8.54559 -6.20902 -4.25142 3.04328 3.23319 3.29881 3.32795 3.43925 4.31281 4.89623 5.13240 5.50452 5.50871 5.59169 5.64643 5.67424 5.91205 6.02459 6.38721 6.41530 6.67432 6.79538 7.06113 7.16519 7.43934 7.61850 7.78526 8.14078 8.53254 8.74012 9.40790 10.89390 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.018414 C = 0.011986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.813197 B = 1520.227713 C = 2335.563975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.505 3.495 4 O -0.527 6.527 5 C -0.121 4.121 6 H 0.095 0.905 7 C 0.062 3.938 8 O -0.396 6.396 9 C 0.060 3.940 10 C 0.039 3.961 11 H 0.057 0.943 12 C -0.525 4.525 13 H 0.061 0.939 14 C 0.070 3.930 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.273 1.273 20 H 0.059 0.941 21 H 0.093 0.907 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 -1.431 6.481 7.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.351 3.649 4 O -0.416 6.416 5 C -0.140 4.140 6 H 0.113 0.887 7 C -0.015 4.015 8 O -0.315 6.315 9 C -0.016 4.016 10 C 0.020 3.980 11 H 0.075 0.925 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.722 3.278 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.198 1.198 20 H 0.078 0.922 21 H 0.111 0.889 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.587 -1.067 6.373 7.391 hybrid contribution -1.175 -0.201 -0.956 1.528 sum -4.762 -1.268 5.417 7.323 Atomic orbital electron populations 1.23095 0.77983 1.02752 1.01861 1.86550 1.22079 1.34124 1.84371 1.23103 0.91577 0.80787 0.69457 1.90559 1.67092 1.36499 1.47453 1.22634 0.87751 1.00074 1.03581 0.88711 1.23212 0.89573 0.93877 0.94870 1.89040 1.36795 1.84241 1.21436 1.23837 0.99946 0.96510 0.81266 1.20025 0.95983 0.95491 0.86530 0.92478 1.21081 0.91670 1.52015 0.91445 0.92130 1.24923 0.95772 0.94278 0.98397 1.69917 1.17796 1.49086 1.15499 0.86539 0.82306 0.78296 0.80685 1.20420 1.20894 1.19819 0.92208 0.88898 0.92752 0.91133 0.90148 0.89334 0.92855 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.66 15 2 O -0.35 -7.11 10.32 -39.27 -0.41 -7.51 15 3 C 0.51 10.98 4.49 36.00 0.16 11.14 15 4 O -0.53 -12.26 15.20 -18.75 -0.28 -12.54 15 5 C -0.12 -2.54 3.62 -90.20 -0.33 -2.87 15 6 H 0.09 1.75 8.14 -51.93 -0.42 1.33 15 7 C 0.06 1.23 7.12 37.93 0.27 1.50 15 8 O -0.40 -8.79 11.66 -35.23 -0.41 -9.20 15 9 C 0.06 1.46 6.59 37.93 0.25 1.71 15 10 C 0.04 0.95 2.93 -90.20 -0.26 0.69 15 11 H 0.06 1.48 8.14 -51.93 -0.42 1.05 15 12 C -0.52 -14.17 7.83 -34.44 -0.27 -14.44 15 13 H 0.06 1.67 5.30 -52.49 -0.28 1.39 15 14 C 0.07 1.89 5.37 -17.82 -0.10 1.80 15 15 N -0.89 -24.62 12.83 55.43 0.71 -23.91 15 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 20 H 0.06 1.01 8.13 -51.93 -0.42 0.58 15 21 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.05 0.77 8.13 -51.93 -0.42 0.34 15 23 H 0.07 1.47 6.83 -51.93 -0.35 1.11 15 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.09 2.17 8.14 -51.93 -0.42 1.75 15 26 H 0.05 1.36 7.86 -51.93 -0.41 0.95 15 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 234.65 15.07 3.54 3.54 Total: -1.00 -29.66 234.65 -4.22 -33.87 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.13 Total: -1.61 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 0.79 Total: 1.18 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.71 Total: -23.91 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.10 Total: -29.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.66 -4.22 -33.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227722.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.511 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds