Wall clock time and date at job start Mon Mar 30 2020 02:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00126 * 2 1 4 4 O 1.20832 * 119.99742 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00264 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.54065 * 57.38381 * 5 3 2 7 7 C 1.54103 * 110.48813 * 294.76212 * 5 3 2 8 8 O 1.43739 * 107.29702 * 243.35765 * 7 5 3 9 9 C 1.44379 * 106.97300 * 333.48132 * 8 7 5 10 10 C 1.54814 * 110.48842 * 179.97438 * 5 3 2 11 11 H 1.09002 * 110.90860 * 21.35725 * 10 5 3 12 12 C 1.50704 * 110.93671 * 257.76492 * 10 5 3 13 13 H 1.08004 * 119.99728 * 2.94911 * 12 10 5 14 14 C 1.37876 * 119.99977 * 182.94646 * 12 10 5 15 15 N 1.31510 * 119.99979 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99833 * 179.97438 * 14 12 10 17 17 H 1.48511 * 109.46750 * 60.00582 * 16 14 12 18 18 H 1.48493 * 109.47141 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47461 * 300.00556 * 16 14 12 20 20 H 1.09003 * 109.47044 * 60.00691 * 1 2 3 21 21 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47358 * 300.00173 * 1 2 3 23 23 H 1.08998 * 109.87729 * 123.92603 * 7 5 3 24 24 H 1.09008 * 109.99897 * 2.85369 * 7 5 3 25 25 H 1.09000 * 110.62052 * 281.56372 * 9 8 7 26 26 H 1.09001 * 110.61632 * 158.56433 * 9 8 7 27 27 H 0.96998 * 120.00052 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9774 0.7453 -0.8588 7 6 4.1361 0.6995 1.3117 8 8 4.8066 1.7727 1.9935 9 6 5.2288 2.7147 0.9841 10 6 4.0315 2.7514 -0.0002 11 1 3.2438 3.4077 0.3699 12 6 4.4784 3.1745 -1.3758 13 1 4.3991 2.4867 -2.2047 14 6 4.9884 4.4397 -1.5762 15 7 5.0853 5.2771 -0.5668 16 14 5.5430 4.9639 -3.2813 17 1 4.3953 4.8868 -4.2206 18 1 6.0485 6.3592 -3.2302 19 1 6.6264 4.0622 -3.7485 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 4.8446 -0.0984 1.0893 24 1 3.3270 0.3142 1.9324 25 1 6.1284 2.3605 0.4808 26 1 5.3953 3.6985 1.4229 27 1 5.4445 6.1671 -0.7077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227726.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:44 Heat of formation + Delta-G solvation = -137.898265 kcal Electronic energy + Delta-G solvation = -13214.768776 eV Core-core repulsion = 10744.743333 eV Total energy + Delta-G solvation = -2470.025443 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12174 -38.07111 -35.88926 -33.20103 -31.25447 -28.67219 -27.17674 -24.73958 -22.93809 -21.09334 -19.37256 -17.32548 -16.55189 -16.28623 -15.84477 -14.77707 -14.63741 -14.20433 -13.89509 -13.06569 -12.78007 -12.11106 -11.98269 -11.78869 -11.04571 -11.02026 -10.70441 -10.61720 -10.42202 -10.28124 -9.79911 -9.55480 -9.05906 -8.80536 -8.43609 -6.13078 -4.16983 2.81272 3.18331 3.28458 3.33360 3.35633 4.35435 4.90793 5.18061 5.25103 5.31789 5.38480 5.49278 5.67317 5.80772 5.99518 6.21421 6.46039 6.68325 6.77082 6.88800 7.29193 7.58444 7.73497 7.92481 8.23877 8.35252 8.83181 9.47345 10.97664 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.037154 B = 0.011918 C = 0.009938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.431971 B = 2348.789136 C = 2816.929976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.470 3.530 4 O -0.492 6.492 5 C -0.117 4.117 6 H 0.111 0.889 7 C 0.066 3.934 8 O -0.398 6.398 9 C 0.058 3.942 10 C 0.039 3.961 11 H 0.064 0.936 12 C -0.520 4.520 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.059 0.941 21 H 0.094 0.906 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.099 0.901 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 -8.962 0.912 9.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.286 6.286 3 C 0.312 3.688 4 O -0.377 6.377 5 C -0.137 4.137 6 H 0.129 0.871 7 C -0.012 4.012 8 O -0.318 6.318 9 C -0.018 4.018 10 C 0.020 3.980 11 H 0.082 0.918 12 C -0.558 4.558 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 H 0.078 0.922 21 H 0.113 0.887 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.117 0.883 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.010 -8.433 1.187 9.414 hybrid contribution 0.010 0.369 -1.257 1.310 sum -4.000 -8.065 -0.070 9.003 Atomic orbital electron populations 1.23147 0.77623 1.02854 1.02309 1.86532 1.22549 1.34644 1.84922 1.23902 0.92194 0.80778 0.71920 1.90641 1.66788 1.36226 1.44062 1.22796 0.86114 1.04315 1.00442 0.87077 1.22859 0.95886 0.90813 0.91609 1.88764 1.75623 1.34547 1.32818 1.23926 0.97768 0.91851 0.88252 1.20306 0.94431 0.86798 0.96470 0.91772 1.20921 1.42735 0.99036 0.93092 0.92261 1.24975 0.95339 0.96246 0.97165 1.69916 1.44900 1.07032 1.30621 0.86557 0.79020 0.77687 0.84193 1.20179 1.21120 1.20088 0.92211 0.88729 0.92294 0.92264 0.91031 0.93266 0.88253 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 101.05 1.07 1.52 15 2 O -0.37 -6.28 10.57 -39.24 -0.41 -6.70 15 3 C 0.47 9.73 7.04 36.00 0.25 9.99 15 4 O -0.49 -11.79 15.18 -18.75 -0.28 -12.07 15 5 C -0.12 -2.46 3.12 -90.24 -0.28 -2.74 15 6 H 0.11 2.17 7.70 -51.93 -0.40 1.77 15 7 C 0.07 1.25 7.35 37.73 0.28 1.52 15 8 O -0.40 -8.87 11.52 -35.23 -0.41 -9.27 15 9 C 0.06 1.39 6.55 38.23 0.25 1.64 15 10 C 0.04 0.98 2.37 -89.74 -0.21 0.77 15 11 H 0.06 1.86 6.88 -51.93 -0.36 1.50 15 12 C -0.52 -14.13 8.51 -34.44 -0.29 -14.42 15 13 H 0.06 1.56 7.58 -52.48 -0.40 1.16 15 14 C 0.07 1.80 5.35 -17.82 -0.10 1.71 15 15 N -0.89 -25.27 12.28 55.43 0.68 -24.59 15 16 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 15 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 20 H 0.06 0.79 8.13 -51.93 -0.42 0.37 15 21 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.06 0.76 8.13 -51.93 -0.42 0.34 15 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.07 1.23 7.69 -51.92 -0.40 0.83 15 25 H 0.05 1.16 8.04 -51.93 -0.42 0.74 15 26 H 0.10 2.55 7.59 -51.93 -0.39 2.16 15 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 LS Contribution 237.59 15.07 3.58 3.58 Total: -1.00 -30.44 237.59 -4.09 -34.53 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -3.19 Total: -1.48 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 0.97 Total: -0.02 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.68 Total: -24.59 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.11 Total: -28.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.44 -4.09 -34.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227726.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.370 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds