Wall clock time and date at job start Mon Mar 30 2020 02:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00126 * 2 1 4 4 O 1.20832 * 119.99742 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00264 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.54065 * 57.38381 * 5 3 2 7 7 C 1.54103 * 110.48813 * 294.76212 * 5 3 2 8 8 O 1.43739 * 107.29702 * 243.35765 * 7 5 3 9 9 C 1.44379 * 106.97300 * 333.48132 * 8 7 5 10 10 C 1.54814 * 110.48842 * 179.97438 * 5 3 2 11 11 H 1.09002 * 110.90860 * 21.35725 * 10 5 3 12 12 C 1.50704 * 110.93671 * 257.76492 * 10 5 3 13 13 H 1.08004 * 119.99728 * 2.94911 * 12 10 5 14 14 C 1.37876 * 119.99977 * 182.94646 * 12 10 5 15 15 N 1.31510 * 119.99979 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99833 * 179.97438 * 14 12 10 17 17 H 1.48511 * 109.46750 * 60.00582 * 16 14 12 18 18 H 1.48493 * 109.47141 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47461 * 300.00556 * 16 14 12 20 20 H 1.09003 * 109.47044 * 60.00691 * 1 2 3 21 21 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47358 * 300.00173 * 1 2 3 23 23 H 1.08998 * 109.87729 * 123.92603 * 7 5 3 24 24 H 1.09008 * 109.99897 * 2.85369 * 7 5 3 25 25 H 1.09000 * 110.62052 * 281.56372 * 9 8 7 26 26 H 1.09001 * 110.61632 * 158.56433 * 9 8 7 27 27 H 0.96998 * 120.00052 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9774 0.7453 -0.8588 7 6 4.1361 0.6995 1.3117 8 8 4.8066 1.7727 1.9935 9 6 5.2288 2.7147 0.9841 10 6 4.0315 2.7514 -0.0002 11 1 3.2438 3.4077 0.3699 12 6 4.4784 3.1745 -1.3758 13 1 4.3991 2.4867 -2.2047 14 6 4.9884 4.4397 -1.5762 15 7 5.0853 5.2771 -0.5668 16 14 5.5430 4.9639 -3.2813 17 1 4.3953 4.8868 -4.2206 18 1 6.0485 6.3592 -3.2302 19 1 6.6264 4.0622 -3.7485 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 4.8446 -0.0984 1.0893 24 1 3.3270 0.3142 1.9324 25 1 6.1284 2.3605 0.4808 26 1 5.3953 3.6985 1.4229 27 1 5.4445 6.1671 -0.7077 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227726.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:44 Heat of formation + Delta-G solvation = -158.600078 kcal Electronic energy + Delta-G solvation = -13215.666474 eV Core-core repulsion = 10744.743333 eV Total energy + Delta-G solvation = -2470.923141 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.72450 -39.76528 -37.44716 -35.20708 -33.06126 -30.46867 -28.40934 -26.76770 -24.51644 -22.89951 -21.06484 -19.12280 -18.23477 -17.93598 -17.40456 -16.57177 -16.38287 -15.94796 -15.55746 -14.55436 -14.29098 -14.00654 -13.75474 -13.04880 -12.94432 -12.81299 -12.57539 -12.39482 -12.03058 -11.78642 -11.56810 -11.36517 -11.07589 -10.67749 -10.37981 -8.20669 -6.31915 1.19562 1.42956 1.44906 1.52539 1.76644 2.40350 3.12189 3.19257 3.62758 3.98285 4.20028 4.32882 4.34140 4.42453 4.58448 4.69383 4.79140 4.86626 4.92652 5.29743 5.37907 5.54507 5.76144 5.95486 6.23339 6.75641 6.79315 7.36295 8.90073 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.037154 B = 0.011918 C = 0.009938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.431971 B = 2348.789136 C = 2816.929976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.475 3.525 4 O -0.535 6.535 5 C -0.116 4.116 6 H 0.129 0.871 7 C 0.066 3.934 8 O -0.409 6.409 9 C 0.072 3.928 10 C 0.031 3.969 11 H 0.018 0.982 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.964 3.036 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.261 1.261 20 H 0.056 0.944 21 H 0.141 0.859 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 -10.891 0.127 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.319 3.681 4 O -0.423 6.423 5 C -0.135 4.135 6 H 0.147 0.853 7 C -0.011 4.011 8 O -0.329 6.329 9 C -0.004 4.004 10 C 0.012 3.988 11 H 0.036 0.964 12 C -0.574 4.574 13 H 0.083 0.917 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.788 3.212 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.185 1.185 20 H 0.075 0.925 21 H 0.159 0.841 22 H 0.077 0.923 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.970 -10.411 0.407 11.150 hybrid contribution -0.116 0.887 -0.975 1.323 sum -4.085 -9.524 -0.568 10.379 Atomic orbital electron populations 1.23572 0.75065 1.05881 1.02220 1.86500 1.24885 1.32151 1.83979 1.23814 0.92163 0.81176 0.70966 1.90633 1.67613 1.37871 1.46220 1.22693 0.86867 1.01494 1.02466 0.85281 1.23130 0.97137 0.90291 0.90559 1.88733 1.76052 1.35238 1.32840 1.23559 0.97474 0.91313 0.88076 1.20125 0.93692 0.89044 0.95945 0.96394 1.21291 1.42544 0.99506 0.94044 0.91685 1.25834 0.95442 0.96356 1.00936 1.70055 1.45735 1.07309 1.32693 0.85524 0.78783 0.77441 0.79430 1.20082 1.20950 1.18535 0.92548 0.84081 0.92308 0.88528 0.89034 0.92735 0.90902 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 15 2 O -0.36 -11.31 10.57 -51.36 -0.54 -11.85 15 3 C 0.47 19.22 7.04 71.23 0.50 19.72 15 4 O -0.53 -25.94 15.18 21.95 0.33 -25.61 15 5 C -0.12 -4.72 3.12 -10.55 -0.03 -4.75 15 6 H 0.13 4.75 7.70 -2.39 -0.02 4.74 15 7 C 0.07 2.31 7.35 72.36 0.53 2.84 15 8 O -0.41 -17.85 11.52 -148.98 -1.72 -19.57 15 9 C 0.07 3.50 6.55 72.68 0.48 3.98 15 10 C 0.03 1.59 2.37 -10.22 -0.02 1.57 15 11 H 0.02 1.09 6.88 -2.39 -0.02 1.07 15 12 C -0.54 -29.24 8.51 25.60 0.22 -29.02 15 13 H 0.06 3.37 7.58 -2.91 -0.02 3.35 15 14 C 0.01 0.78 5.35 84.66 0.45 1.23 15 15 N -0.92 -53.57 12.28 21.45 0.26 -53.31 15 16 Si 0.96 43.03 29.54 68.60 2.03 45.06 15 17 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 20 H 0.06 1.39 8.13 -2.39 -0.02 1.37 15 21 H 0.14 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.06 1.41 8.13 -2.39 -0.02 1.39 15 23 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 24 H 0.09 2.86 7.69 -2.38 -0.02 2.85 15 25 H 0.05 2.57 8.04 -2.39 -0.02 2.55 15 26 H 0.07 3.89 7.59 -2.39 -0.02 3.87 15 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -66.47 237.59 4.84 -61.63 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.16 Total: 6.28 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.32 Total: -2.64 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.26 Total: -53.31 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -1.93 Total: -57.02 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -66.47 4.84 -61.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227726.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.969 kcal (2) G-P(sol) polarization free energy of solvation -66.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds