Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48489 * 109.47348 * 269.99971 * 3 2 1 5 5 H 1.48506 * 109.47098 * 30.00473 * 3 2 1 6 6 H 1.48499 * 109.46907 * 149.99752 * 3 2 1 7 7 C 1.37875 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.53738 * 299.99667 * 9 7 2 11 11 O 1.20833 * 119.99655 * 239.81775 * 10 9 7 12 12 O 1.34222 * 120.00432 * 60.10042 * 10 9 7 13 13 C 1.53180 * 109.61360 * 60.21727 * 9 7 2 14 14 C 1.53085 * 109.16461 * 62.93630 * 13 9 7 15 15 O 1.42902 * 109.41828 * 57.60317 * 14 13 9 16 16 C 1.42905 * 114.09615 * 298.84107 * 15 14 13 17 17 C 1.53095 * 109.41102 * 61.16067 * 16 15 14 18 18 H 0.96996 * 120.00090 * 359.97438 * 1 2 3 19 19 H 0.96701 * 117.00458 * 179.72178 * 12 10 9 20 20 H 1.09004 * 109.52011 * 182.83678 * 13 9 7 21 21 H 1.09002 * 109.52155 * 303.02299 * 13 9 7 22 22 H 1.09005 * 109.47869 * 297.61781 * 14 13 9 23 23 H 1.08998 * 109.49306 * 177.59262 * 14 13 9 24 24 H 1.08995 * 109.48499 * 301.17696 * 16 15 14 25 25 H 1.09001 * 109.48949 * 181.14465 * 16 15 14 26 26 H 1.09000 * 109.51620 * 182.48169 * 17 16 15 27 27 H 1.09003 * 109.52619 * 62.29642 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.3999 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 0.3838 -2.5804 1.2302 11 8 0.5428 -3.4779 2.0234 12 8 -0.5691 -1.6590 1.4415 13 6 0.3739 -2.5865 -1.2521 14 6 1.2691 -2.5824 -2.4939 15 8 2.1898 -3.6728 -2.4194 16 6 3.0681 -3.6188 -1.2935 17 6 2.2451 -3.6646 -0.0034 18 1 -0.4850 0.8400 0.0004 19 1 -1.1029 -1.7551 2.2420 20 1 -0.2082 -3.5077 -1.2257 21 1 -0.2995 -1.7299 -1.2856 22 1 1.8207 -1.6435 -2.5413 23 1 0.6529 -2.6874 -3.3869 24 1 3.6433 -2.6935 -1.3251 25 1 3.7479 -4.4705 -1.3214 26 1 2.9101 -3.5792 0.8560 27 1 1.7009 -4.6077 0.0483 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260292503.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = -136.775644 kcal Electronic energy + Delta-G solvation = -13897.346004 eV Core-core repulsion = 11427.369241 eV Total energy + Delta-G solvation = -2469.976762 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.34038 -37.69280 -34.55829 -33.94335 -31.38746 -29.98689 -25.97552 -24.20354 -22.55548 -20.81225 -18.87731 -16.82368 -16.05126 -15.69843 -15.02764 -14.69890 -14.05707 -13.89023 -13.65093 -12.75605 -12.56807 -11.73949 -11.52377 -11.27749 -11.02697 -10.72007 -10.40528 -10.31458 -10.01929 -9.78867 -9.37597 -9.21890 -9.18239 -8.66329 -8.24305 -6.12747 -4.31780 3.19394 3.27373 3.30268 3.78012 4.27436 4.66332 4.80647 5.12235 5.86133 6.05572 6.10654 6.25169 6.29343 6.39768 6.53093 6.76634 6.90758 6.98243 7.04579 7.23816 7.54289 7.77128 7.90049 8.04749 8.15461 8.64253 9.33615 9.51686 10.82089 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.019465 C = 0.014716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.937922 B = 1438.107568 C = 1902.287347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.081 3.919 10 C 0.492 3.508 11 O -0.585 6.585 12 O -0.445 6.445 13 C -0.138 4.138 14 C 0.076 3.924 15 O -0.401 6.401 16 C 0.074 3.926 17 C -0.126 4.126 18 H 0.264 0.736 19 H 0.349 0.651 20 H 0.030 0.970 21 H 0.110 0.890 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -1.128 -2.166 2.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.080 3.920 10 C 0.339 3.661 11 O -0.480 6.480 12 O -0.247 6.247 13 C -0.176 4.176 14 C 0.000 4.000 15 O -0.320 6.320 16 C -0.003 4.003 17 C -0.164 4.164 18 H 0.075 0.925 19 H 0.202 0.798 20 H 0.048 0.952 21 H 0.128 0.872 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.007 -1.311 -2.473 2.975 hybrid contribution 0.038 1.080 1.000 1.472 sum 1.045 -0.231 -1.473 1.821 Atomic orbital electron populations 1.69798 1.05357 1.26491 1.44389 1.25046 0.95001 0.99275 0.94715 0.86556 0.79987 0.83069 0.78304 1.20367 1.21070 1.19855 1.20861 0.93016 0.88448 1.53904 0.91470 1.17992 0.90866 0.95415 0.87757 1.25036 0.77074 0.75918 0.88098 1.90502 1.70877 1.37083 1.49520 1.85581 1.44512 1.50735 1.43822 1.22160 0.99022 1.01721 0.94742 1.22451 0.90876 0.89613 0.97109 1.87724 1.49821 1.48262 1.46220 1.22425 0.91616 1.00766 0.85488 1.21974 0.98715 0.98036 0.97700 0.92520 0.79811 0.95171 0.87188 0.92148 0.91058 0.92560 0.90769 0.91749 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.87 8.05 55.43 0.45 -20.43 15 2 C 0.07 1.67 5.08 -17.82 -0.09 1.58 15 3 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 15 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.53 -13.25 6.27 -34.44 -0.22 -13.47 15 8 H 0.07 1.69 6.92 -52.48 -0.36 1.32 15 9 C 0.08 1.97 0.48 -156.63 -0.08 1.89 15 10 C 0.49 12.47 6.89 36.00 0.25 12.72 15 11 O -0.58 -15.52 16.72 -18.76 -0.31 -15.83 15 12 O -0.44 -10.56 9.79 -39.24 -0.38 -10.95 15 13 C -0.14 -3.16 4.68 -26.59 -0.12 -3.28 15 14 C 0.08 1.57 6.62 37.20 0.25 1.82 15 15 O -0.40 -8.37 10.77 -35.23 -0.38 -8.74 15 16 C 0.07 1.45 6.61 37.21 0.25 1.70 15 17 C -0.13 -2.79 4.19 -26.59 -0.11 -2.90 15 18 H 0.26 6.44 8.31 -40.82 -0.34 6.10 15 19 H 0.35 6.74 9.10 45.56 0.41 7.15 15 20 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.11 2.69 6.04 -51.93 -0.31 2.38 15 22 H 0.06 1.30 7.38 -51.93 -0.38 0.92 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.06 1.12 6.87 -51.93 -0.36 0.76 15 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 26 H 0.06 1.42 8.14 -51.93 -0.42 1.00 15 27 H 0.05 1.19 8.02 -51.93 -0.42 0.78 15 LS Contribution 222.22 15.07 3.35 3.35 Total: -1.00 -28.36 222.22 -4.42 -32.78 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -2.24 Total: 5.06 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 0.12 Total: 0.05 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.45 Total: -20.43 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.08 Total: -35.52 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -28.36 -4.42 -32.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292503.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.995 kcal (2) G-P(sol) polarization free energy of solvation -28.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds