Wall clock time and date at job start Mon Mar 30 2020 02:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86796 * 120.00483 * 2 1 4 4 H 1.48504 * 109.46890 * 240.00117 * 3 2 1 5 5 H 1.48503 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47367 * 119.99726 * 3 2 1 7 7 C 1.38641 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99670 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.42898 * 117.00215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.74115 * 314.66901 * 11 10 9 13 13 C 1.53495 * 113.47165 * 183.92240 * 11 10 9 14 14 C 1.53613 * 83.30868 * 219.16783 * 13 11 10 15 15 N 1.47073 * 113.46687 * 85.41009 * 11 10 9 16 16 C 1.34771 * 136.06007 * 321.86897 * 15 11 10 17 17 N 1.34774 * 120.00170 * 179.97438 * 16 15 11 18 18 O 1.21588 * 119.99976 * 0.02562 * 16 15 11 19 19 H 0.97010 * 119.99847 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47259 * 300.00352 * 10 9 7 21 21 H 1.09001 * 109.47074 * 60.00374 * 10 9 7 22 22 H 1.08996 * 114.20412 * 332.74577 * 13 11 10 23 23 H 1.09005 * 114.20525 * 105.56219 * 13 11 10 24 24 H 1.08989 * 113.41587 * 271.23968 * 14 13 11 25 25 H 1.08999 * 113.55591 * 140.81861 * 14 13 11 26 26 H 0.97008 * 120.00100 * 0.02562 * 17 16 15 27 27 H 0.96993 * 120.00297 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3342 -2.3692 0.0005 10 6 2.1124 -3.5677 0.0005 11 6 1.1804 -4.7810 -0.0001 12 1 0.3630 -4.6848 0.7146 13 6 1.9218 -6.1215 0.0962 14 6 0.8543 -6.5792 -0.9092 15 7 0.7385 -5.1793 -1.3451 16 6 0.3830 -4.5421 -2.4782 17 7 0.0199 -5.2517 -3.5649 18 8 0.3909 -3.3270 -2.5204 19 1 -0.4850 0.8401 -0.0004 20 1 2.7413 -3.5926 -0.8894 21 1 2.7412 -3.5926 0.8906 22 1 2.9349 -6.1017 -0.3055 23 1 1.8523 -6.6016 1.0723 24 1 -0.0496 -6.9628 -0.4364 25 1 1.2403 -7.2439 -1.6820 26 1 0.0140 -6.2212 -3.5314 27 1 -0.2356 -4.7931 -4.3805 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:28 Heat of formation + Delta-G solvation = -16.407392 kcal Electronic energy + Delta-G solvation = -13074.057515 eV Core-core repulsion = 10641.593063 eV Total energy + Delta-G solvation = -2432.464452 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01454 -37.42849 -35.64599 -33.01670 -31.46340 -29.06145 -27.83808 -24.18924 -22.29680 -22.07554 -19.04906 -17.65742 -17.03821 -16.47997 -15.69295 -14.90674 -14.43884 -13.83611 -13.77767 -13.57228 -12.51648 -12.34952 -12.22138 -11.54937 -11.21419 -11.08599 -10.76626 -10.39259 -9.88471 -9.44489 -9.27598 -9.14198 -8.94754 -8.14827 -7.70489 -5.69166 -3.31019 3.06806 3.44662 3.47237 3.50051 3.89490 4.44196 4.54194 4.59719 5.17687 5.25242 5.45671 5.60667 5.64781 5.81461 5.87658 6.01637 6.23751 6.59980 6.79670 6.85380 7.29808 7.50066 7.66552 8.58164 8.66236 9.30492 9.72938 10.43916 11.52050 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048118 B = 0.010013 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.757743 B = 2795.653915 C = 3162.434473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.023 3.977 3 Si 0.921 3.079 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.352 4.352 8 H 0.056 0.944 9 O -0.276 6.276 10 C 0.071 3.929 11 C 0.162 3.838 12 H 0.093 0.907 13 C -0.149 4.149 14 C 0.099 3.901 15 N -0.660 5.660 16 C 0.717 3.283 17 N -0.875 5.875 18 O -0.535 6.535 19 H 0.254 0.746 20 H 0.025 0.975 21 H 0.029 0.971 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.387 0.613 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -15.525 -2.338 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.175 4.175 3 Si 0.749 3.251 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.074 0.926 9 O -0.191 6.191 10 C -0.007 4.007 11 C 0.058 3.942 12 H 0.111 0.889 13 C -0.187 4.187 14 C -0.024 4.024 15 N -0.402 5.402 16 C 0.418 3.582 17 N -0.445 5.445 18 O -0.406 6.406 19 H 0.064 0.936 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.111 0.889 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.213 0.787 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.976 -14.402 -2.412 14.736 hybrid contribution 0.512 0.419 -0.452 0.801 sum 2.488 -13.983 -2.864 14.489 Atomic orbital electron populations 1.70040 1.05311 1.25365 1.52084 1.24882 0.95549 0.97433 0.99598 0.86113 0.78514 0.82335 0.78134 1.20612 1.21030 1.20599 1.20672 0.89780 0.83059 1.49680 0.92615 1.85727 1.30592 1.09793 1.92954 1.22225 0.92837 0.87763 0.97906 1.22530 0.95770 0.93843 0.82017 0.88903 1.23475 0.98845 0.96510 0.99915 1.22829 0.98034 0.85310 0.96260 1.48812 1.72288 1.07844 1.11288 1.15471 0.78216 0.85085 0.79448 1.42993 1.76987 1.09664 1.14812 1.91252 1.57155 1.10312 1.81909 0.93592 0.95693 0.95277 0.88890 0.89312 0.90436 0.91291 0.78688 0.75841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -30.26 13.67 55.48 0.76 -29.50 15 2 C 0.02 0.75 5.49 -17.51 -0.10 0.65 15 3 Si 0.92 23.91 29.55 -169.99 -5.02 18.89 15 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 15 5 H -0.28 -7.23 7.11 56.52 0.40 -6.83 15 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 7 C -0.35 -11.36 9.89 30.88 0.31 -11.05 15 8 H 0.06 1.69 7.77 -52.48 -0.41 1.28 15 9 O -0.28 -8.67 8.99 -23.08 -0.21 -8.87 15 10 C 0.07 1.70 5.45 37.16 0.20 1.90 15 11 C 0.16 3.02 4.32 -72.39 -0.31 2.71 15 12 H 0.09 1.77 8.14 -51.93 -0.42 1.35 15 13 C -0.15 -1.79 8.04 -26.16 -0.21 -2.00 15 14 C 0.10 1.13 8.28 -8.43 -0.07 1.06 15 15 N -0.66 -11.82 3.57 -182.98 -0.65 -12.47 15 16 C 0.72 14.84 8.97 -86.93 -0.78 14.06 15 17 N -0.87 -12.36 8.88 27.63 0.25 -12.11 15 18 O -0.53 -14.99 16.67 -1.30 -0.02 -15.01 15 19 H 0.25 8.11 8.31 -40.82 -0.34 7.77 15 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.09 1.08 8.12 -51.93 -0.42 0.66 15 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.08 0.75 8.14 -51.94 -0.42 0.33 15 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 26 H 0.39 3.94 8.55 -40.82 -0.35 3.59 15 27 H 0.41 5.29 8.93 -40.82 -0.36 4.93 15 LS Contribution 243.62 15.07 3.67 3.67 Total: -1.00 -41.86 243.62 -5.40 -47.26 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.21 Total: 0.82 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.96 Total: 7.33 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.35 Total: -54.09 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.23 Total: -23.89 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.02 Total: 18.89 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -41.86 -5.40 -47.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.855 kcal (2) G-P(sol) polarization free energy of solvation -41.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds