Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86796 * 120.00483 * 2 1 4 4 H 1.48504 * 109.46890 * 240.00117 * 3 2 1 5 5 H 1.48503 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47367 * 119.99726 * 3 2 1 7 7 C 1.38641 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99670 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.42898 * 117.00215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.74115 * 314.66901 * 11 10 9 13 13 C 1.53495 * 113.47165 * 183.92240 * 11 10 9 14 14 C 1.53613 * 83.30868 * 219.16783 * 13 11 10 15 15 N 1.47073 * 113.46687 * 85.41009 * 11 10 9 16 16 C 1.34771 * 136.06007 * 321.86897 * 15 11 10 17 17 N 1.34774 * 120.00170 * 179.97438 * 16 15 11 18 18 O 1.21588 * 119.99976 * 0.02562 * 16 15 11 19 19 H 0.97010 * 119.99847 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47259 * 300.00352 * 10 9 7 21 21 H 1.09001 * 109.47074 * 60.00374 * 10 9 7 22 22 H 1.08996 * 114.20412 * 332.74577 * 13 11 10 23 23 H 1.09005 * 114.20525 * 105.56219 * 13 11 10 24 24 H 1.08989 * 113.41587 * 271.23968 * 14 13 11 25 25 H 1.08999 * 113.55591 * 140.81861 * 14 13 11 26 26 H 0.97008 * 120.00100 * 0.02562 * 17 16 15 27 27 H 0.96993 * 120.00297 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3342 -2.3692 0.0005 10 6 2.1124 -3.5677 0.0005 11 6 1.1804 -4.7810 -0.0001 12 1 0.3630 -4.6848 0.7146 13 6 1.9218 -6.1215 0.0962 14 6 0.8543 -6.5792 -0.9092 15 7 0.7385 -5.1793 -1.3451 16 6 0.3830 -4.5421 -2.4782 17 7 0.0199 -5.2517 -3.5649 18 8 0.3909 -3.3270 -2.5204 19 1 -0.4850 0.8401 -0.0004 20 1 2.7413 -3.5926 -0.8894 21 1 2.7412 -3.5926 0.8906 22 1 2.9349 -6.1017 -0.3055 23 1 1.8523 -6.6016 1.0723 24 1 -0.0496 -6.9628 -0.4364 25 1 1.2403 -7.2439 -1.6820 26 1 0.0140 -6.2212 -3.5314 27 1 -0.2356 -4.7931 -4.3805 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -52.594123 kcal Electronic energy + Delta-G solvation = -13075.626690 eV Core-core repulsion = 10641.593063 eV Total energy + Delta-G solvation = -2434.033627 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.38430 -38.99299 -37.80266 -34.53178 -33.83008 -30.46169 -29.41471 -26.47945 -23.76969 -23.40098 -20.46471 -19.62905 -18.70865 -17.87853 -17.51517 -16.66690 -16.02914 -15.85410 -15.39371 -15.21455 -14.30531 -14.02667 -13.53946 -13.31824 -12.95309 -12.77056 -12.35303 -12.18601 -11.56927 -11.45113 -11.21263 -11.06993 -10.60201 -10.08574 -9.52487 -8.11617 -5.79853 1.34297 1.45186 1.51375 1.74192 2.33207 2.36898 3.19763 3.34008 3.49208 3.85303 4.12921 4.31763 4.41881 4.50178 4.66290 4.79172 4.82518 5.00528 5.08637 5.21134 5.38964 6.07328 6.23809 6.26291 7.25100 7.29701 7.84360 8.15537 9.14014 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048118 B = 0.010013 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.757743 B = 2795.653915 C = 3162.434473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.048 4.048 3 Si 1.007 2.993 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.375 4.375 8 H 0.065 0.935 9 O -0.320 6.320 10 C 0.065 3.935 11 C 0.141 3.859 12 H 0.081 0.919 13 C -0.118 4.118 14 C 0.107 3.893 15 N -0.671 5.671 16 C 0.706 3.294 17 N -0.845 5.845 18 O -0.626 6.626 19 H 0.256 0.744 20 H 0.007 0.993 21 H 0.045 0.955 22 H 0.099 0.901 23 H 0.128 0.872 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.411 0.589 27 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 -17.446 -2.094 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.240 4.240 3 Si 0.829 3.171 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.454 4.454 8 H 0.082 0.918 9 O -0.236 6.236 10 C -0.013 4.013 11 C 0.036 3.964 12 H 0.099 0.901 13 C -0.156 4.156 14 C -0.013 4.013 15 N -0.412 5.412 16 C 0.406 3.594 17 N -0.415 5.415 18 O -0.504 6.504 19 H 0.065 0.935 20 H 0.025 0.975 21 H 0.063 0.937 22 H 0.118 0.882 23 H 0.146 0.854 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.242 0.758 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.158 -16.465 -2.168 16.905 hybrid contribution 0.163 0.848 -0.524 1.010 sum 3.321 -15.617 -2.692 16.192 Atomic orbital electron populations 1.70254 1.07757 1.26744 1.53684 1.26282 0.96774 1.02182 0.98804 0.84821 0.77206 0.75877 0.79200 1.19631 1.20223 1.18001 1.21252 0.90421 0.84228 1.49461 0.91765 1.85664 1.33273 1.11495 1.93152 1.22579 0.93994 0.87235 0.97492 1.22841 0.95928 0.94806 0.82781 0.90069 1.23463 0.98718 0.91079 1.02330 1.23189 0.99015 0.82258 0.96873 1.49003 1.71041 1.11051 1.10150 1.15910 0.77908 0.84420 0.81118 1.42598 1.74982 1.10709 1.13241 1.91188 1.61010 1.14462 1.83771 0.93512 0.97502 0.93675 0.88211 0.85399 0.87914 0.87487 0.75848 0.75089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -66.72 13.67 21.61 0.30 -66.43 15 2 C -0.05 -3.17 5.49 84.83 0.47 -2.71 15 3 Si 1.01 50.00 29.55 68.60 2.03 52.03 15 4 H -0.27 -12.93 7.11 99.48 0.71 -12.23 15 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 15 7 C -0.37 -24.97 9.89 67.92 0.67 -24.30 15 8 H 0.06 3.99 7.77 -2.91 -0.02 3.97 15 9 O -0.32 -21.06 8.99 -75.61 -0.68 -21.74 15 10 C 0.06 3.17 5.45 71.98 0.39 3.56 15 11 C 0.14 5.19 4.32 41.79 0.18 5.37 15 12 H 0.08 3.13 8.14 -2.39 -0.02 3.11 15 13 C -0.12 -2.38 8.04 30.97 0.25 -2.13 15 14 C 0.11 1.98 8.28 83.22 0.69 2.67 15 15 N -0.67 -23.35 3.57 -851.07 -3.04 -26.39 15 16 C 0.71 29.55 8.97 179.06 1.61 31.16 15 17 N -0.84 -22.82 8.88 -184.75 -1.64 -24.47 15 18 O -0.63 -36.99 16.67 2.31 0.04 -36.96 15 19 H 0.26 16.92 8.31 -92.70 -0.77 16.15 15 20 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 21 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.10 1.93 8.12 -2.39 -0.02 1.91 15 23 H 0.13 1.66 8.14 -2.38 -0.02 1.64 15 24 H 0.10 1.47 8.14 -2.39 -0.02 1.46 15 25 H 0.11 1.24 8.14 -2.39 -0.02 1.22 15 26 H 0.41 7.11 8.55 -92.70 -0.79 6.32 15 27 H 0.42 10.48 8.93 -92.71 -0.83 9.65 15 Total: -1.00 -99.08 243.62 0.83 -98.25 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.43 Total: 12.08 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 4.26 Total: 13.63 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -4.38 Total: -117.28 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.64 Total: -58.70 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.03 Total: 52.03 kcal Total: -99.08 0.83 -98.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.653 kcal (2) G-P(sol) polarization free energy of solvation -99.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds