Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48504 * 109.46853 * 269.99495 * 3 2 1 5 5 H 1.48498 * 109.46891 * 29.99538 * 3 2 1 6 6 H 1.48495 * 109.46761 * 149.99959 * 3 2 1 7 7 C 1.38639 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00336 * 0.02562 * 7 2 1 9 9 O 1.34932 * 119.99518 * 179.97438 * 7 2 1 10 10 C 1.42902 * 116.99725 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47100 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.73585 * 46.24591 * 11 10 9 13 13 C 1.53615 * 113.50363 * 177.01930 * 11 10 9 14 14 C 1.53504 * 83.30296 * 140.81967 * 13 11 10 15 15 N 1.47064 * 113.46913 * 275.49783 * 11 10 9 16 16 C 1.34779 * 136.05768 * 38.06693 * 15 11 10 17 17 N 1.34771 * 120.00233 * 180.02562 * 16 15 11 18 18 O 1.21587 * 119.99921 * 0.04769 * 16 15 11 19 19 H 0.97004 * 120.00159 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.46852 * 60.00405 * 10 9 7 21 21 H 1.08998 * 109.47604 * 300.01070 * 10 9 7 22 22 H 1.09002 * 114.20756 * 27.25251 * 13 11 10 23 23 H 1.08994 * 114.23851 * 254.38951 * 13 11 10 24 24 H 1.09002 * 113.46865 * 219.16924 * 14 13 11 25 25 H 1.08999 * 113.46581 * 88.78699 * 14 13 11 26 26 H 0.97009 * 120.00243 * 0.02562 * 17 16 15 27 27 H 0.96995 * 120.00747 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2007 0.0000 10 6 4.0070 -2.4740 0.0012 11 6 5.5237 -2.2736 0.0010 12 1 5.8503 -1.5284 0.7265 13 6 6.3154 -3.5879 0.0755 14 6 7.2424 -2.8767 -0.9201 15 7 6.0875 -2.0699 -1.3419 16 6 5.7110 -1.4273 -2.4653 17 7 6.5055 -1.4510 -3.5536 18 8 4.6547 -0.8259 -2.4966 19 1 -0.4850 0.8401 -0.0004 20 1 3.7137 -3.0319 -0.8882 21 1 3.7143 -3.0301 0.8918 22 1 5.7914 -4.4493 -0.3387 23 1 6.7686 -3.7828 1.0474 24 1 7.6232 -3.5324 -1.7032 25 1 8.0280 -2.2927 -0.4406 26 1 7.3482 -1.9308 -3.5287 27 1 6.2345 -0.9889 -4.3622 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323795.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = -17.816812 kcal Electronic energy + Delta-G solvation = -13150.353935 eV Core-core repulsion = 10717.828366 eV Total energy + Delta-G solvation = -2432.525569 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18323 -37.60687 -35.94933 -33.18325 -31.63992 -29.24750 -28.16068 -24.12056 -22.32014 -22.16702 -19.21936 -17.82881 -17.13943 -16.65204 -15.82134 -15.13793 -14.65801 -13.99184 -13.80023 -13.49546 -12.62779 -12.44509 -12.21503 -12.01130 -11.47263 -11.14742 -10.65024 -10.31508 -9.78617 -9.61168 -9.37940 -9.30229 -9.07898 -8.32425 -7.92083 -5.78223 -3.42363 2.90480 3.58910 3.69876 3.70760 3.82696 4.35068 4.44462 4.81206 5.02256 5.06694 5.33416 5.45691 5.54432 5.68928 5.72785 5.82596 6.05501 6.42122 6.49801 6.71053 7.15411 7.34622 8.09866 8.40431 8.58056 9.11746 9.63938 10.20705 11.35140 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.041380 B = 0.011819 C = 0.010307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.495773 B = 2368.546055 C = 2715.862429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.042 3.958 3 Si 0.914 3.086 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.343 4.343 8 H 0.074 0.926 9 O -0.316 6.316 10 C 0.083 3.917 11 C 0.157 3.843 12 H 0.093 0.907 13 C -0.147 4.147 14 C 0.099 3.901 15 N -0.661 5.661 16 C 0.720 3.280 17 N -0.873 5.873 18 O -0.545 6.545 19 H 0.266 0.734 20 H 0.033 0.967 21 H 0.038 0.962 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.388 0.612 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.041 -7.199 -2.399 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.153 4.153 3 Si 0.743 3.257 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.421 4.421 8 H 0.092 0.908 9 O -0.231 6.231 10 C 0.004 3.996 11 C 0.053 3.947 12 H 0.111 0.889 13 C -0.186 4.186 14 C -0.024 4.024 15 N -0.403 5.403 16 C 0.421 3.579 17 N -0.442 5.442 18 O -0.417 6.417 19 H 0.075 0.925 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.215 0.785 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 17.183 -6.414 -2.463 18.506 hybrid contribution 0.620 0.521 -0.478 0.941 sum 17.803 -5.893 -2.942 18.983 Atomic orbital electron populations 1.69705 1.05334 1.26853 1.54905 1.24237 0.94758 0.98184 0.98144 0.86031 0.79414 0.82129 0.78119 1.20770 1.22422 1.19431 1.20317 0.78730 0.94774 1.48291 0.90820 1.85307 1.20129 1.23997 1.93698 1.22161 0.89592 0.88961 0.98842 1.22632 0.95066 0.94767 0.82198 0.88889 1.23469 0.97755 0.97221 1.00113 1.22828 0.90739 0.92294 0.96566 1.48828 1.23708 1.55981 1.11816 1.15441 0.83840 0.79171 0.79448 1.42975 1.24696 1.61285 1.15277 1.91198 1.22705 1.45801 1.82008 0.92473 0.94889 0.94404 0.88654 0.89149 0.91113 0.90337 0.78505 0.75708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -30.82 13.96 55.48 0.77 -30.05 15 2 C 0.04 1.39 5.49 -17.51 -0.10 1.30 15 3 Si 0.91 26.36 28.62 -169.99 -4.86 21.50 15 4 H -0.28 -8.29 7.11 56.52 0.40 -7.89 15 5 H -0.30 -8.15 7.11 56.52 0.40 -7.74 15 6 H -0.27 -7.71 7.11 56.52 0.40 -7.31 15 7 C -0.34 -11.08 10.35 30.88 0.32 -10.76 15 8 H 0.07 2.45 8.00 -52.49 -0.42 2.03 15 9 O -0.32 -9.19 7.73 -24.94 -0.19 -9.38 15 10 C 0.08 1.85 5.47 37.16 0.20 2.05 15 11 C 0.16 2.67 4.33 -72.33 -0.31 2.35 15 12 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 13 C -0.15 -1.58 8.04 -26.15 -0.21 -1.79 15 14 C 0.10 1.00 8.28 -8.50 -0.07 0.93 15 15 N -0.66 -10.83 3.57 -182.99 -0.65 -11.48 15 16 C 0.72 13.79 8.97 -86.92 -0.78 13.01 15 17 N -0.87 -11.25 8.88 27.63 0.25 -11.01 15 18 O -0.54 -14.20 16.60 -3.13 -0.05 -14.25 15 19 H 0.27 8.32 8.31 -40.82 -0.34 7.98 15 20 H 0.03 0.78 8.14 -51.92 -0.42 0.35 15 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.09 1.01 8.12 -51.93 -0.42 0.59 15 23 H 0.09 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.39 3.51 8.55 -40.82 -0.35 3.16 15 27 H 0.41 4.84 8.93 -40.82 -0.36 4.48 15 LS Contribution 242.36 15.07 3.65 3.65 Total: -1.00 -40.84 242.36 -5.26 -46.10 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -3.23 Total: -2.18 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.95 Total: 7.09 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.37 Total: -52.54 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.24 Total: -23.63 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -4.86 Total: 21.50 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -40.84 -5.26 -46.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323795.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.287 kcal (2) G-P(sol) polarization free energy of solvation -40.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds