Wall clock time and date at job start Mon Mar 30 2020 02:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48504 * 109.46853 * 269.99495 * 3 2 1 5 5 H 1.48498 * 109.46891 * 29.99538 * 3 2 1 6 6 H 1.48495 * 109.46761 * 149.99959 * 3 2 1 7 7 C 1.38639 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00336 * 0.02562 * 7 2 1 9 9 O 1.34932 * 119.99518 * 179.97438 * 7 2 1 10 10 C 1.42902 * 116.99725 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47100 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.73585 * 46.24591 * 11 10 9 13 13 C 1.53615 * 113.50363 * 177.01930 * 11 10 9 14 14 C 1.53504 * 83.30296 * 140.81967 * 13 11 10 15 15 N 1.47064 * 113.46913 * 275.49783 * 11 10 9 16 16 C 1.34779 * 136.05768 * 38.06693 * 15 11 10 17 17 N 1.34771 * 120.00233 * 180.02562 * 16 15 11 18 18 O 1.21587 * 119.99921 * 0.04769 * 16 15 11 19 19 H 0.97004 * 120.00159 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.46852 * 60.00405 * 10 9 7 21 21 H 1.08998 * 109.47604 * 300.01070 * 10 9 7 22 22 H 1.09002 * 114.20756 * 27.25251 * 13 11 10 23 23 H 1.08994 * 114.23851 * 254.38951 * 13 11 10 24 24 H 1.09002 * 113.46865 * 219.16924 * 14 13 11 25 25 H 1.08999 * 113.46581 * 88.78699 * 14 13 11 26 26 H 0.97009 * 120.00243 * 0.02562 * 17 16 15 27 27 H 0.96995 * 120.00747 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2007 0.0000 10 6 4.0070 -2.4740 0.0012 11 6 5.5237 -2.2736 0.0010 12 1 5.8503 -1.5284 0.7265 13 6 6.3154 -3.5879 0.0755 14 6 7.2424 -2.8767 -0.9201 15 7 6.0875 -2.0699 -1.3419 16 6 5.7110 -1.4273 -2.4653 17 7 6.5055 -1.4510 -3.5536 18 8 4.6547 -0.8259 -2.4966 19 1 -0.4850 0.8401 -0.0004 20 1 3.7137 -3.0319 -0.8882 21 1 3.7143 -3.0301 0.8918 22 1 5.7914 -4.4493 -0.3387 23 1 6.7686 -3.7828 1.0474 24 1 7.6232 -3.5324 -1.7032 25 1 8.0280 -2.2927 -0.4406 26 1 7.3482 -1.9308 -3.5287 27 1 6.2345 -0.9889 -4.3622 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323795.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:29 Heat of formation + Delta-G solvation = -52.457602 kcal Electronic energy + Delta-G solvation = -13151.856072 eV Core-core repulsion = 10717.828366 eV Total energy + Delta-G solvation = -2434.027707 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42358 -39.04927 -38.03386 -34.55816 -34.07685 -30.56010 -29.61913 -26.29430 -23.73645 -23.41443 -20.51853 -19.78113 -18.73689 -17.94062 -17.64848 -16.79322 -16.17319 -15.71069 -15.45461 -15.19314 -14.39272 -14.13005 -13.96155 -13.42830 -13.00769 -12.89543 -12.36063 -12.00455 -11.65293 -11.52441 -11.44097 -11.11365 -10.62460 -10.34528 -9.55186 -8.28696 -5.94121 1.27420 1.39118 1.53284 1.71601 2.30147 2.43636 3.05222 3.24977 3.44666 3.64275 4.09349 4.24985 4.38956 4.45488 4.62342 4.68587 4.79363 5.01086 5.04715 5.37165 5.53416 6.05485 6.14952 6.24278 7.12675 7.20729 7.80054 7.87261 8.88198 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.041380 B = 0.011819 C = 0.010307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.495773 B = 2368.546055 C = 2715.862429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.015 4.015 3 Si 0.980 3.020 4 H -0.294 1.294 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.345 4.345 8 H 0.045 0.955 9 O -0.335 6.335 10 C 0.073 3.927 11 C 0.140 3.860 12 H 0.094 0.906 13 C -0.120 4.120 14 C 0.108 3.892 15 N -0.672 5.672 16 C 0.708 3.292 17 N -0.845 5.845 18 O -0.630 6.630 19 H 0.272 0.728 20 H 0.011 0.989 21 H 0.051 0.949 22 H 0.097 0.903 23 H 0.129 0.871 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.411 0.589 27 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.251 -7.739 -2.013 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.207 4.207 3 Si 0.806 3.194 4 H -0.221 1.221 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.423 4.423 8 H 0.063 0.937 9 O -0.251 6.251 10 C -0.004 4.004 11 C 0.036 3.964 12 H 0.112 0.888 13 C -0.158 4.158 14 C -0.013 4.013 15 N -0.413 5.413 16 C 0.409 3.591 17 N -0.415 5.415 18 O -0.509 6.509 19 H 0.081 0.919 20 H 0.030 0.970 21 H 0.069 0.931 22 H 0.115 0.885 23 H 0.148 0.852 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.242 0.758 27 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 20.490 -7.019 -2.072 21.758 hybrid contribution -0.318 0.525 -0.614 0.868 sum 20.172 -6.494 -2.686 21.361 Atomic orbital electron populations 1.69792 1.06603 1.28121 1.55956 1.25083 0.95751 1.01634 0.98210 0.85057 0.78380 0.78492 0.77454 1.22059 1.19651 1.19252 1.20351 0.80471 0.93859 1.47664 0.93674 1.85253 1.18128 1.28003 1.93733 1.22580 0.93104 0.86500 0.98261 1.22953 0.91395 0.98978 0.83097 0.88809 1.23474 0.95929 0.93893 1.02512 1.23176 0.89342 0.91640 0.97124 1.49011 1.25969 1.55590 1.10748 1.15870 0.83423 0.78778 0.81044 1.42620 1.24624 1.60478 1.13774 1.91134 1.26459 1.49535 1.83765 0.91862 0.97035 0.93097 0.88469 0.85243 0.87723 0.87535 0.75792 0.75028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.35 13.96 21.61 0.30 -65.05 15 2 C -0.01 -0.98 5.49 84.83 0.47 -0.51 15 3 Si 0.98 55.52 28.62 68.60 1.96 57.49 15 4 H -0.29 -17.12 7.11 99.48 0.71 -16.41 15 5 H -0.27 -14.03 7.11 99.48 0.71 -13.32 15 6 H -0.27 -14.91 7.11 99.48 0.71 -14.21 15 7 C -0.34 -23.07 10.35 67.92 0.70 -22.37 15 8 H 0.05 3.18 8.00 -2.91 -0.02 3.15 15 9 O -0.34 -19.99 7.73 -73.96 -0.57 -20.56 15 10 C 0.07 3.31 5.47 71.98 0.39 3.70 15 11 C 0.14 4.51 4.33 41.83 0.18 4.69 15 12 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 13 C -0.12 -2.06 8.04 30.97 0.25 -1.81 15 14 C 0.11 1.64 8.28 83.18 0.69 2.32 15 15 N -0.67 -20.59 3.57 -851.13 -3.04 -23.62 15 16 C 0.71 26.66 8.97 179.06 1.61 28.27 15 17 N -0.84 -20.11 8.88 -184.75 -1.64 -21.75 15 18 O -0.63 -33.78 16.60 4.06 0.07 -33.72 15 19 H 0.27 17.27 8.31 -92.71 -0.77 16.50 15 20 H 0.01 0.56 8.14 -2.38 -0.02 0.54 15 21 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.10 1.68 8.12 -2.39 -0.02 1.66 15 23 H 0.13 1.31 8.14 -2.39 -0.02 1.29 15 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 15 25 H 0.11 1.13 8.14 -2.39 -0.02 1.11 15 26 H 0.41 5.96 8.55 -92.70 -0.79 5.16 15 27 H 0.42 9.26 8.93 -92.71 -0.83 8.43 15 Total: -1.00 -93.94 242.36 0.94 -93.00 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -0.43 Total: -0.08 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 4.29 Total: 14.29 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -4.37 Total: -110.42 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.50 Total: -54.28 kcal Atomic # 14 Polarization: 55.52 SS G_CDS: 1.96 Total: 57.49 kcal Total: -93.94 0.94 -93.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323795.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.540 kcal (2) G-P(sol) polarization free energy of solvation -93.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds