Wall clock time and date at job start Mon Mar 30 2020 03:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 C 1.53000 * 109.47166 * 64.99895 * 3 2 1 14 14 H 1.08998 * 110.35540 * 305.70169 * 13 3 2 15 15 C 1.54271 * 110.39939 * 183.37945 * 13 3 2 16 16 C 1.54022 * 108.84063 * 213.34639 * 15 13 3 17 17 C 1.55131 * 106.98355 * 47.10120 * 16 15 13 18 18 S 1.83092 * 110.40058 * 68.02617 * 13 3 2 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 25 25 H 1.09006 * 109.61126 * 333.17063 * 15 13 3 26 26 H 1.09002 * 109.61310 * 93.33191 * 15 13 3 27 27 H 1.08996 * 109.88813 * 287.73927 * 16 15 13 28 28 H 1.09000 * 110.00585 * 166.53282 * 16 15 13 29 29 H 1.09002 * 110.86026 * 199.75727 * 17 16 15 30 30 H 1.09005 * 110.85757 * 76.12026 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 6 1.6352 2.1266 1.3073 14 1 0.5592 2.0447 1.4607 15 6 2.0655 3.6081 1.2947 16 6 2.4388 4.0298 2.7282 17 6 3.3635 2.9232 3.2999 18 16 2.5391 1.3906 2.7193 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.8293 -0.0604 -2.9502 25 1 2.9287 3.7328 0.6409 26 1 1.2431 4.2248 0.9321 27 1 1.5383 4.1135 3.3365 28 1 2.9662 4.9836 2.7110 29 1 3.3879 2.9620 4.3889 30 1 4.3683 3.0044 2.8850 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260343217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:40 Heat of formation + Delta-G solvation = -25.076507 kcal Electronic energy + Delta-G solvation = -11525.047544 eV Core-core repulsion = 9638.500386 eV Total energy + Delta-G solvation = -1886.547159 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -36.54094 -33.99164 -31.60051 -29.05924 -26.43752 -24.03608 -22.53773 -20.17431 -19.22324 -16.72860 -15.35874 -14.89000 -14.32711 -13.74389 -13.28437 -12.83416 -12.58724 -12.19136 -11.88025 -11.34113 -10.99998 -10.89485 -10.71097 -10.55334 -10.46029 -10.27503 -9.78556 -9.70579 -9.15178 -8.98691 -8.64414 -8.20198 -6.62032 -5.89435 -3.91228 2.70267 3.33593 3.36754 3.43038 3.45647 4.52098 5.18491 5.26708 5.40928 5.53509 5.80673 5.89070 5.99002 6.14902 6.23750 6.32344 6.35612 6.44724 6.59053 6.66960 6.93558 7.02627 7.25470 7.49186 7.81597 8.00371 8.19681 8.53763 9.08958 9.70008 11.16800 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.029711 B = 0.015929 C = 0.012188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.198404 B = 1757.341066 C = 2296.764240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.061 3.939 4 H 0.034 0.966 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.020 4.020 14 H 0.074 0.926 15 C -0.126 4.126 16 C -0.124 4.124 17 C -0.078 4.078 18 S -0.288 6.288 19 H 0.032 0.968 20 H 0.042 0.958 21 H 0.035 0.965 22 H 0.039 0.961 23 H 0.095 0.905 24 H 0.257 0.743 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 5.013 6.629 8.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.042 3.958 4 H 0.052 0.948 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.202 1.202 13 C -0.148 4.148 14 H 0.092 0.908 15 C -0.165 4.165 16 C -0.163 4.163 17 C -0.227 4.227 18 S -0.062 6.062 19 H 0.051 0.949 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.113 0.887 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.517 3.810 6.882 8.259 hybrid contribution 0.983 1.055 -0.585 1.556 sum -1.535 4.865 6.297 8.104 Atomic orbital electron populations 1.21898 0.99764 0.99202 0.99753 1.21640 0.91127 1.00258 1.02738 1.18768 0.96386 0.91908 0.88774 0.94818 1.21203 0.90897 1.36461 1.04252 0.91948 1.24918 0.97558 0.95778 0.95930 1.69878 1.34489 1.39513 1.09650 0.86666 0.86569 0.78379 0.76792 1.20798 1.21596 1.20153 1.24064 0.98351 0.95277 0.97143 0.90762 1.22459 1.02806 0.94912 0.96329 1.22543 0.98761 0.98014 0.96953 1.24105 1.01466 0.95033 1.02068 1.87198 1.62445 1.18771 1.37758 0.94864 0.93859 0.94575 0.94212 0.88679 0.93274 0.89097 0.91654 0.91572 0.91159 0.89561 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.68 37.16 0.36 -2.65 16 2 C -0.12 -2.88 5.17 -26.73 -0.14 -3.02 16 3 C 0.06 1.48 1.60 -91.77 -0.15 1.34 16 4 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.49 -12.97 6.77 -34.44 -0.23 -13.21 16 6 H 0.06 1.66 6.62 -52.49 -0.35 1.31 16 7 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 8 N -0.90 -25.48 11.29 55.43 0.63 -24.86 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C -0.02 -0.41 2.86 -26.07 -0.07 -0.49 16 14 H 0.07 1.45 6.38 -51.93 -0.33 1.12 16 15 C -0.13 -2.26 5.74 -25.53 -0.15 -2.41 16 16 C -0.12 -1.87 6.46 -25.07 -0.16 -2.03 16 17 C -0.08 -1.29 7.38 38.28 0.28 -1.01 16 18 S -0.29 -5.89 20.17 -107.50 -2.17 -8.06 16 19 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 21 H 0.04 0.68 6.47 -51.93 -0.34 0.34 16 22 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 23 H 0.09 2.57 5.95 -51.93 -0.31 2.26 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.09 1.82 6.74 -51.93 -0.35 1.47 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 246.10 15.07 3.71 3.71 Total: -1.00 -27.87 246.10 -7.77 -35.64 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.56 Total: -0.95 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -0.35 Total: -21.98 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.63 Total: -24.86 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -2.17 Total: -8.06 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.87 -7.77 -35.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260343217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.563 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds