Wall clock time and date at job start Mon Mar 30 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 C 1.53000 * 109.47166 * 64.99895 * 3 2 1 14 14 H 1.08998 * 110.35540 * 305.70169 * 13 3 2 15 15 C 1.54271 * 110.39939 * 183.37945 * 13 3 2 16 16 C 1.54022 * 108.84063 * 213.34639 * 15 13 3 17 17 C 1.55131 * 106.98355 * 47.10120 * 16 15 13 18 18 S 1.83092 * 110.40058 * 68.02617 * 13 3 2 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 25 25 H 1.09006 * 109.61126 * 333.17063 * 15 13 3 26 26 H 1.09002 * 109.61310 * 93.33191 * 15 13 3 27 27 H 1.08996 * 109.88813 * 287.73927 * 16 15 13 28 28 H 1.09000 * 110.00585 * 166.53282 * 16 15 13 29 29 H 1.09002 * 110.86026 * 199.75727 * 17 16 15 30 30 H 1.09005 * 110.85757 * 76.12026 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 6 1.6352 2.1266 1.3073 14 1 0.5592 2.0447 1.4607 15 6 2.0655 3.6081 1.2947 16 6 2.4388 4.0298 2.7282 17 6 3.3635 2.9232 3.2999 18 16 2.5391 1.3906 2.7193 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.8293 -0.0604 -2.9502 25 1 2.9287 3.7328 0.6409 26 1 1.2431 4.2248 0.9321 27 1 1.5383 4.1135 3.3365 28 1 2.9662 4.9836 2.7110 29 1 3.3879 2.9620 4.3889 30 1 4.3683 3.0044 2.8850 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260343217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:37 Heat of formation + Delta-G solvation = -39.638302 kcal Electronic energy + Delta-G solvation = -11525.678991 eV Core-core repulsion = 9638.500386 eV Total energy + Delta-G solvation = -1887.178606 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.21885 -35.58490 -33.59931 -30.66640 -28.20044 -25.73406 -24.24188 -21.58793 -21.09426 -18.64635 -17.04919 -16.52679 -16.11854 -15.32195 -14.96230 -14.45123 -14.31981 -13.70939 -13.55275 -13.11981 -12.83119 -12.47528 -12.32785 -12.28735 -12.11806 -11.74586 -11.66330 -11.52654 -10.95454 -10.73545 -10.49350 -10.23208 -8.24650 -7.98756 -6.04996 1.23465 1.41469 1.44161 1.51421 1.82989 2.49408 3.29529 3.88323 3.98582 4.18349 4.32756 4.50788 4.61631 4.67333 4.71822 4.81558 4.87681 4.98791 5.08709 5.08739 5.29378 5.35069 5.47030 5.60119 5.76183 5.98157 6.17178 6.50254 7.00925 7.57804 9.06207 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.029711 B = 0.015929 C = 0.012188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.198404 B = 1757.341066 C = 2296.764240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.061 3.939 4 H 0.007 0.993 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.941 3.059 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.267 1.267 13 C -0.014 4.014 14 H 0.085 0.915 15 C -0.127 4.127 16 C -0.113 4.113 17 C -0.065 4.065 18 S -0.344 6.344 19 H 0.047 0.953 20 H 0.043 0.957 21 H 0.052 0.948 22 H 0.027 0.973 23 H 0.060 0.940 24 H 0.255 0.745 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 6.407 8.087 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.025 0.975 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.565 5.565 9 Si 0.769 3.231 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.142 4.142 14 H 0.103 0.897 15 C -0.165 4.165 16 C -0.152 4.152 17 C -0.213 4.213 18 S -0.118 6.118 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.601 5.214 8.351 10.182 hybrid contribution 1.017 0.629 -1.012 1.566 sum -1.583 5.843 7.339 9.514 Atomic orbital electron populations 1.21766 0.96730 1.00518 1.00560 1.21480 0.93877 0.99687 1.00328 1.18672 0.95061 0.92068 0.90081 0.97487 1.21469 0.92321 1.35321 1.03679 0.92232 1.25607 1.01233 0.96049 0.96068 1.70014 1.35787 1.40596 1.10086 0.85801 0.82308 0.78334 0.76673 1.21101 1.21476 1.19186 1.23912 0.98837 0.96566 0.94889 0.89676 1.22451 1.02432 0.93473 0.98177 1.22512 0.99543 0.98375 0.94742 1.24245 1.00762 0.92559 1.03765 1.87350 1.63477 1.22911 1.38047 0.93355 0.93821 0.92859 0.95453 0.92131 0.93597 0.91766 0.89569 0.89568 0.88334 0.86582 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 9.68 71.98 0.70 -4.80 16 2 C -0.12 -5.64 5.17 30.60 0.16 -5.48 16 3 C 0.06 2.97 1.60 -11.54 -0.02 2.95 16 4 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 5 C -0.49 -26.19 6.77 25.60 0.17 -26.01 16 6 H 0.06 3.16 6.62 -2.91 -0.02 3.14 16 7 C 0.01 0.40 5.29 84.66 0.45 0.85 16 8 N -0.92 -53.87 11.29 21.45 0.24 -53.62 16 9 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 C -0.01 -0.55 2.86 31.03 0.09 -0.47 16 14 H 0.09 3.18 6.38 -2.39 -0.02 3.16 16 15 C -0.13 -4.26 5.74 31.37 0.18 -4.08 16 16 C -0.11 -2.96 6.46 31.67 0.20 -2.76 16 17 C -0.07 -1.96 7.38 72.71 0.54 -1.43 16 18 S -0.34 -13.63 20.17 -56.49 -1.14 -14.77 16 19 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.05 1.91 6.47 -2.38 -0.02 1.90 16 22 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 23 H 0.06 3.38 5.95 -2.39 -0.01 3.36 16 24 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.06 2.50 6.74 -2.38 -0.02 2.49 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -60.31 246.10 4.69 -55.62 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.10 Total: 7.42 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 2.47 Total: -41.22 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.24 Total: -53.62 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -13.63 SS G_CDS: -1.14 Total: -14.77 kcal Total: -60.31 4.69 -55.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260343217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.982 kcal (2) G-P(sol) polarization free energy of solvation -60.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds