Wall clock time and date at job start Mon Mar 30 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46837 * 2 1 4 4 H 1.08993 * 109.47042 * 176.55851 * 3 2 1 5 5 C 1.50699 * 109.46634 * 56.56036 * 3 2 1 6 6 H 1.08001 * 119.99913 * 239.99469 * 5 3 2 7 7 C 1.37881 * 120.00489 * 60.00033 * 5 3 2 8 8 N 1.31517 * 119.99496 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 120.00355 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47467 * 59.99655 * 9 7 5 11 11 H 1.48506 * 109.47014 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47125 * 299.99514 * 9 7 5 13 13 C 1.53001 * 109.47212 * 296.56231 * 3 2 1 14 14 H 1.09004 * 110.30423 * 57.95322 * 13 3 2 15 15 C 1.53706 * 110.33840 * 180.12352 * 13 3 2 16 16 C 1.52937 * 112.49122 * 116.04900 * 15 13 3 17 17 C 1.55152 * 108.96355 * 30.09743 * 16 15 13 18 18 S 1.83394 * 110.33999 * 295.66708 * 13 3 2 19 19 H 1.09000 * 109.46603 * 185.00829 * 1 2 3 20 20 H 1.09004 * 109.47316 * 305.00076 * 1 2 3 21 21 H 1.08999 * 109.47220 * 65.00816 * 1 2 3 22 22 H 1.09007 * 109.47147 * 240.00674 * 2 1 3 23 23 H 1.08990 * 109.47483 * 120.00406 * 2 1 3 24 24 H 0.97002 * 120.00016 * 180.02562 * 8 7 5 25 25 H 1.09005 * 108.88286 * 236.84078 * 15 13 3 26 26 H 1.09003 * 108.88654 * 355.25071 * 15 13 3 27 27 H 1.08997 * 109.60668 * 150.02669 * 16 15 13 28 28 H 1.08999 * 109.60142 * 270.16932 * 16 15 13 29 29 H 1.08997 * 111.13414 * 76.47047 * 17 16 15 30 30 H 1.09000 * 111.13329 * 200.65662 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1282 1.4433 0.0617 5 6 1.4692 2.1770 1.1856 6 1 0.8553 3.0526 1.0341 7 6 1.7306 1.7313 2.4640 8 7 2.4777 0.6649 2.6485 9 14 1.0236 2.6421 3.9336 10 1 -0.4590 2.6419 3.8498 11 1 1.4493 1.9670 5.1859 12 1 1.5192 4.0421 3.9335 13 6 1.6018 2.1385 -1.2902 14 1 0.5160 2.1136 -1.3835 15 6 2.1068 3.5900 -1.3124 16 6 3.1033 3.8455 -2.4441 17 6 2.7682 2.9062 -3.6326 18 16 2.3876 1.3413 -2.7430 19 1 -0.3632 -1.0238 0.0897 20 1 -0.3634 0.5895 0.8418 21 1 -0.3633 0.4342 -0.9314 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8898 24 1 2.6614 0.3510 3.5478 25 1 1.2545 4.2583 -1.4352 26 1 2.5900 3.8101 -0.3604 27 1 3.0313 4.8840 -2.7673 28 1 4.1152 3.6440 -2.0928 29 1 1.8998 3.2654 -4.1848 30 1 3.6278 2.7843 -4.2917 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260343228.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:54 Heat of formation + Delta-G solvation = -26.995959 kcal Electronic energy + Delta-G solvation = -11471.462689 eV Core-core repulsion = 9584.832296 eV Total energy + Delta-G solvation = -1886.630392 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -36.60291 -34.15545 -31.47515 -28.99950 -26.07894 -24.48758 -23.09194 -20.01966 -19.06478 -16.22015 -15.72903 -14.99605 -14.42048 -13.79493 -13.52087 -12.80875 -12.56236 -12.15202 -11.87250 -11.46844 -10.99849 -10.91353 -10.78093 -10.62329 -10.41208 -10.17502 -9.69864 -9.47611 -9.41872 -9.11019 -8.57905 -8.32020 -7.02841 -5.98437 -4.04939 2.53170 3.14203 3.29950 3.35698 3.38072 4.42773 5.09670 5.21030 5.31782 5.54295 5.71265 5.77988 5.93341 6.18511 6.23485 6.50352 6.56890 6.63099 6.70965 6.79363 6.94446 7.16826 7.50355 7.57260 7.74804 7.91518 8.14608 8.39920 8.95735 9.57719 11.06629 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.044063 B = 0.012094 C = 0.010496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.295560 B = 2314.729430 C = 2667.041202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C 0.067 3.933 4 H 0.035 0.965 5 C -0.507 4.507 6 H 0.055 0.945 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.005 4.005 14 H 0.083 0.917 15 C -0.124 4.124 16 C -0.122 4.122 17 C -0.076 4.076 18 S -0.327 6.327 19 H 0.022 0.978 20 H 0.063 0.937 21 H 0.029 0.971 22 H 0.021 0.979 23 H 0.089 0.911 24 H 0.261 0.739 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 4.302 -7.295 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C 0.047 3.953 4 H 0.054 0.946 5 C -0.547 4.547 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.133 4.133 14 H 0.101 0.899 15 C -0.163 4.163 16 C -0.161 4.161 17 C -0.224 4.224 18 S -0.100 6.100 19 H 0.041 0.959 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.039 0.961 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.320 3.015 -7.467 8.059 hybrid contribution -0.659 1.614 1.091 2.057 sum -0.979 4.629 -6.376 7.940 Atomic orbital electron populations 1.21655 0.98142 0.98505 1.00581 1.21519 0.94271 0.99191 1.00303 1.18780 0.96901 0.91711 0.87908 0.94648 1.20995 1.31660 1.11838 0.90165 0.92652 1.24905 0.95128 0.94967 0.98645 1.69885 1.37609 1.23184 1.21681 0.86730 0.79517 0.79944 0.82235 1.20317 1.21350 1.20347 1.24065 1.00252 0.94521 0.94470 0.89923 1.22084 0.98455 0.95780 1.00009 1.22382 1.01032 0.98671 0.93974 1.24232 1.03421 0.95337 0.99428 1.87753 1.80408 1.15965 1.25841 0.95928 0.91758 0.95221 0.96082 0.89265 0.92939 0.92664 0.88725 0.91453 0.90911 0.90303 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.32 37.16 0.35 -2.58 16 2 C -0.11 -2.79 5.33 -26.73 -0.14 -2.93 16 3 C 0.07 1.63 1.57 -91.77 -0.14 1.48 16 4 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.51 -13.08 5.97 -34.44 -0.21 -13.29 16 6 H 0.06 1.40 7.46 -52.49 -0.39 1.01 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.76 11.35 55.43 0.63 -24.13 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C -0.01 -0.11 2.57 -26.36 -0.07 -0.18 16 14 H 0.08 1.74 6.59 -51.93 -0.34 1.40 16 15 C -0.12 -2.26 5.48 -26.40 -0.14 -2.40 16 16 C -0.12 -1.84 6.34 -25.62 -0.16 -2.00 16 17 C -0.08 -1.13 7.52 38.30 0.29 -0.84 16 18 S -0.33 -6.37 21.46 -107.50 -2.31 -8.67 16 19 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.06 1.52 6.93 -51.93 -0.36 1.16 16 21 H 0.03 0.61 6.74 -51.93 -0.35 0.26 16 22 H 0.02 0.49 7.06 -51.93 -0.37 0.13 16 23 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 1.90 6.91 -51.93 -0.36 1.54 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 246.25 15.07 3.71 3.71 Total: -1.00 -27.07 246.25 -7.90 -34.97 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.58 Total: -0.48 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.33 Total: -21.09 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.63 Total: -24.13 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -2.31 Total: -8.67 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.07 -7.90 -34.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260343228.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.976 kcal (2) G-P(sol) polarization free energy of solvation -27.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds