Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99750 * 2 1 4 4 H 1.48497 * 109.46880 * 240.00102 * 3 2 1 5 5 H 1.48496 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46909 * 120.00293 * 3 2 1 7 7 C 1.37877 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99527 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.37004 * 119.99713 * 179.97438 * 10 9 7 12 12 N 1.25934 * 116.48197 * 0.02562 * 11 10 9 13 13 C 1.44550 * 131.17153 * 181.48567 * 12 11 10 14 14 C 1.52932 * 112.43386 * 340.30336 * 13 12 11 15 15 S 1.82172 * 107.95392 * 49.97008 * 14 13 12 16 16 C 1.50211 * 116.47649 * 179.97438 * 11 10 9 17 17 H 0.97000 * 119.99681 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47640 * 59.99778 * 9 7 2 19 19 H 1.09007 * 109.47293 * 299.99380 * 9 7 2 20 20 H 0.96994 * 120.00429 * 359.97438 * 10 9 7 21 21 H 1.08996 * 108.88706 * 101.06455 * 13 12 11 22 22 H 1.09000 * 108.88477 * 219.64240 * 13 12 11 23 23 H 1.09004 * 109.76684 * 290.35965 * 14 13 12 24 24 H 1.08995 * 109.76744 * 169.58380 * 14 13 12 25 25 H 1.09006 * 109.57661 * 42.47538 * 16 11 10 26 26 H 1.08999 * 109.57820 * 282.08927 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7464 -4.9042 0.0025 12 7 0.4965 -5.0579 0.0016 13 6 -0.3152 -6.2536 0.0302 14 6 0.4601 -7.4961 -0.4102 15 16 2.0204 -7.5464 0.5287 16 6 2.7909 -5.9838 0.0032 17 1 -0.4850 0.8401 0.0004 18 1 0.6248 -2.5571 -0.8896 19 1 0.6241 -2.5567 0.8904 20 1 3.1568 -3.4354 0.0021 21 1 -0.6812 -6.4074 1.0453 22 1 -1.1678 -6.1172 -0.6351 23 1 0.6740 -7.4381 -1.4775 24 1 -0.1261 -8.3904 -0.1992 25 1 3.5893 -5.7192 0.6966 26 1 3.1994 -6.0974 -1.0010 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260438624.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = 20.426795 kcal Electronic energy + Delta-G solvation = -10662.100127 eV Core-core repulsion = 8673.985796 eV Total energy + Delta-G solvation = -1988.114331 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.068 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -37.93044 -34.37311 -32.62545 -30.18307 -28.69726 -26.45874 -23.48477 -22.31133 -18.61626 -16.83613 -16.21801 -15.38464 -14.91712 -14.90035 -14.36489 -14.13931 -13.29990 -12.80921 -12.60669 -12.03440 -11.85911 -11.47927 -10.92132 -10.85306 -10.22149 -10.12004 -9.88762 -9.25896 -8.49982 -8.40123 -7.56699 -7.06042 -6.08069 -4.13515 1.69610 2.36704 3.27297 3.29367 3.34111 3.35613 4.25118 4.45361 4.70603 4.98788 5.11469 5.27199 5.28970 5.48322 5.58456 5.91256 6.13481 6.21320 7.46425 7.70888 7.75629 8.06448 8.19413 8.65460 8.91420 9.42302 9.54296 11.01988 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.080644 B = 0.007414 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.122278 B = 3775.882460 C = 4063.601251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.269 3.731 10 N -0.709 5.709 11 C 0.431 3.569 12 N -0.656 5.656 13 C 0.113 3.887 14 C -0.119 4.119 15 S -0.258 6.258 16 C -0.093 4.093 17 H 0.264 0.736 18 H 0.022 0.978 19 H 0.023 0.977 20 H 0.392 0.608 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.120 0.880 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.510 -11.691 -0.820 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.077 0.923 9 C 0.148 3.852 10 N -0.344 5.344 11 C 0.148 3.852 12 N -0.384 5.384 13 C -0.020 4.020 14 C -0.269 4.269 15 S -0.032 6.032 16 C -0.247 4.247 17 H 0.074 0.926 18 H 0.040 0.960 19 H 0.041 0.959 20 H 0.225 0.775 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.126 0.874 25 H 0.138 0.862 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.849 -11.910 -0.115 12.246 hybrid contribution 0.848 1.102 -0.845 1.626 sum 3.696 -10.808 -0.959 11.463 Atomic orbital electron populations 1.69974 1.06026 1.27101 1.49342 1.24916 0.94859 0.99211 0.94953 0.86542 0.79456 0.82666 0.78602 1.20191 1.21157 1.20166 1.21294 0.93176 0.90970 1.52664 0.92306 1.18872 0.87909 0.81049 0.97391 1.45289 1.09530 1.02814 1.76805 1.19619 0.87670 0.86699 0.91164 1.66614 1.09210 1.30527 1.32066 1.21320 0.95433 0.83893 1.01312 1.24141 0.96642 1.04339 1.01738 1.86888 1.23543 1.28341 1.64462 1.23130 1.01107 0.94387 1.06037 0.92604 0.95968 0.95858 0.77494 0.91163 0.90156 0.89787 0.87362 0.86167 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 15 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 15 9 C 0.27 7.13 5.20 -5.19 -0.03 7.10 15 10 N -0.71 -14.91 5.61 -60.13 -0.34 -15.25 15 11 C 0.43 8.19 7.49 -157.47 -1.18 7.01 15 12 N -0.66 -13.43 8.87 -62.65 -0.56 -13.99 15 13 C 0.11 1.81 7.02 -5.12 -0.04 1.77 15 14 C -0.12 -1.56 6.69 37.12 0.25 -1.31 15 15 S -0.26 -3.70 22.43 -107.50 -2.41 -6.11 15 16 C -0.09 -1.35 6.49 35.77 0.23 -1.11 15 17 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 18 H 0.02 0.65 8.14 -51.93 -0.42 0.23 15 19 H 0.02 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.39 7.23 8.22 -40.82 -0.34 6.89 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.11 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.12 1.54 8.14 -51.93 -0.42 1.12 15 26 H 0.10 1.32 8.14 -51.93 -0.42 0.89 15 LS Contribution 237.96 15.07 3.59 3.59 Total: -1.00 -30.66 237.96 -8.43 -39.09 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.25 Total: 2.26 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.18 Total: -0.08 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.16 Total: -54.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.41 Total: -6.11 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.66 -8.43 -39.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438624.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.521 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds