Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99750 * 2 1 4 4 H 1.48497 * 109.46880 * 240.00102 * 3 2 1 5 5 H 1.48496 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46909 * 120.00293 * 3 2 1 7 7 C 1.37877 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99527 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.37004 * 119.99713 * 179.97438 * 10 9 7 12 12 N 1.25934 * 116.48197 * 0.02562 * 11 10 9 13 13 C 1.44550 * 131.17153 * 181.48567 * 12 11 10 14 14 C 1.52932 * 112.43386 * 340.30336 * 13 12 11 15 15 S 1.82172 * 107.95392 * 49.97008 * 14 13 12 16 16 C 1.50211 * 116.47649 * 179.97438 * 11 10 9 17 17 H 0.97000 * 119.99681 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47640 * 59.99778 * 9 7 2 19 19 H 1.09007 * 109.47293 * 299.99380 * 9 7 2 20 20 H 0.96994 * 120.00429 * 359.97438 * 10 9 7 21 21 H 1.08996 * 108.88706 * 101.06455 * 13 12 11 22 22 H 1.09000 * 108.88477 * 219.64240 * 13 12 11 23 23 H 1.09004 * 109.76684 * 290.35965 * 14 13 12 24 24 H 1.08995 * 109.76744 * 169.58380 * 14 13 12 25 25 H 1.09006 * 109.57661 * 42.47538 * 16 11 10 26 26 H 1.08999 * 109.57820 * 282.08927 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7464 -4.9042 0.0025 12 7 0.4965 -5.0579 0.0016 13 6 -0.3152 -6.2536 0.0302 14 6 0.4601 -7.4961 -0.4102 15 16 2.0204 -7.5464 0.5287 16 6 2.7909 -5.9838 0.0032 17 1 -0.4850 0.8401 0.0004 18 1 0.6248 -2.5571 -0.8896 19 1 0.6241 -2.5567 0.8904 20 1 3.1568 -3.4354 0.0021 21 1 -0.6812 -6.4074 1.0453 22 1 -1.1678 -6.1172 -0.6351 23 1 0.6740 -7.4381 -1.4775 24 1 -0.1261 -8.3904 -0.1992 25 1 3.5893 -5.7192 0.6966 26 1 3.1994 -6.0974 -1.0010 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260438624.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = -0.880289 kcal Electronic energy + Delta-G solvation = -10663.024072 eV Core-core repulsion = 8673.985796 eV Total energy + Delta-G solvation = -1989.038275 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.45549 -36.05000 -34.53828 -31.75450 -29.99694 -28.38508 -24.79383 -24.32664 -20.18694 -18.72701 -17.38302 -17.15951 -16.56312 -16.21138 -16.02584 -15.35956 -14.81624 -14.37603 -14.13066 -13.90496 -13.52208 -12.86119 -12.71615 -12.50921 -12.12902 -11.56794 -11.43510 -11.22152 -10.60494 -9.77503 -8.81286 -8.70718 -8.22187 -6.36934 0.58046 1.22795 1.43961 1.47617 1.55499 1.82549 2.39079 2.84201 3.12020 3.44510 3.77973 4.01151 4.19930 4.40426 4.46385 4.55378 4.82963 4.91442 5.31913 5.51044 5.63874 5.96173 6.40770 6.81231 6.97087 7.34031 7.98461 8.89346 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.080644 B = 0.007414 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.122278 B = 3775.882460 C = 4063.601251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.294 3.706 10 N -0.713 5.713 11 C 0.426 3.574 12 N -0.703 5.703 13 C 0.107 3.893 14 C -0.108 4.108 15 S -0.261 6.261 16 C -0.084 4.084 17 H 0.266 0.734 18 H -0.017 1.017 19 H -0.019 1.019 20 H 0.405 0.595 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.138 0.862 25 H 0.140 0.860 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 -12.244 -1.005 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.094 0.906 9 C 0.171 3.829 10 N -0.351 5.351 11 C 0.144 3.856 12 N -0.431 5.431 13 C -0.024 4.024 14 C -0.257 4.257 15 S -0.035 6.035 16 C -0.237 4.237 17 H 0.075 0.925 18 H 0.000 1.000 19 H -0.001 1.001 20 H 0.240 0.760 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.156 0.844 25 H 0.158 0.842 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.501 -12.519 -0.299 13.307 hybrid contribution 0.244 1.184 -0.776 1.437 sum 4.745 -11.334 -1.076 12.334 Atomic orbital electron populations 1.70137 1.08088 1.28238 1.50450 1.25974 0.95714 1.03535 0.94192 0.85311 0.77999 0.77196 0.79313 1.18855 1.21107 1.18940 1.21710 0.94127 0.91453 1.52278 0.90594 1.18173 0.88071 0.83186 0.93511 1.45010 1.09304 1.02686 1.78071 1.20032 0.88594 0.86793 0.90150 1.66503 1.10849 1.33957 1.31764 1.21376 0.95344 0.84047 1.01641 1.24104 0.95962 1.03828 1.01833 1.86940 1.24073 1.27488 1.65019 1.23074 0.99934 0.92689 1.08019 0.92506 0.99957 1.00100 0.75957 0.91171 0.89698 0.89081 0.84384 0.84242 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.38 15 2 C 0.01 0.29 5.46 84.65 0.46 0.75 15 3 Si 0.98 43.06 29.54 68.60 2.03 45.09 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.29 -12.44 7.11 99.48 0.71 -11.74 15 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.56 -30.89 9.28 25.60 0.24 -30.65 15 8 H 0.08 3.85 7.60 -2.91 -0.02 3.82 15 9 C 0.29 16.16 5.20 85.63 0.45 16.60 15 10 N -0.71 -30.11 5.61 -344.15 -1.93 -32.04 15 11 C 0.43 15.99 7.49 138.61 1.04 17.03 15 12 N -0.70 -29.04 8.87 -344.69 -3.06 -32.10 15 13 C 0.11 3.37 7.02 86.72 0.61 3.98 15 14 C -0.11 -2.58 6.69 71.96 0.48 -2.10 15 15 S -0.26 -6.85 22.43 -56.49 -1.27 -8.11 15 16 C -0.08 -2.24 6.49 71.08 0.46 -1.78 15 17 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 18 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 15 19 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 15 20 H 0.40 14.59 8.22 -92.71 -0.76 13.83 15 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.09 2.09 8.14 -2.39 -0.02 2.08 15 24 H 0.14 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.14 3.19 8.14 -2.38 -0.02 3.17 15 26 H 0.13 2.83 8.14 -2.39 -0.02 2.81 15 Total: -1.00 -67.36 237.96 0.20 -67.16 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.41 Total: 12.56 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 3.74 Total: 3.83 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -4.70 Total: -120.52 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.27 Total: -8.11 kcal Total: -67.36 0.20 -67.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438624.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.276 kcal (2) G-P(sol) polarization free energy of solvation -67.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds