Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47675 * 2 1 4 4 C 1.53003 * 109.46985 * 119.99987 * 2 1 3 5 5 H 1.08994 * 109.47159 * 305.92227 * 4 2 1 6 6 C 1.50706 * 109.47111 * 185.92460 * 4 2 1 7 7 H 1.08001 * 120.00133 * 298.48015 * 6 4 2 8 8 C 1.37872 * 119.99978 * 118.47742 * 6 4 2 9 9 N 1.31519 * 120.00182 * 5.61282 * 8 6 4 10 10 Si 1.86806 * 120.00069 * 185.61717 * 8 6 4 11 11 H 1.48500 * 109.46943 * 89.99807 * 10 8 6 12 12 H 1.48495 * 109.46881 * 209.99606 * 10 8 6 13 13 H 1.48496 * 109.46929 * 329.99773 * 10 8 6 14 14 C 1.52997 * 109.47091 * 65.92719 * 4 2 1 15 15 H 1.09001 * 113.40848 * 314.66455 * 14 4 2 16 16 C 1.55892 * 114.38094 * 181.03236 * 14 4 2 17 17 C 1.55968 * 102.90837 * 222.42379 * 16 14 4 18 18 S 1.83086 * 82.46320 * 24.16623 * 17 16 14 19 19 H 1.09004 * 109.46975 * 300.00210 * 1 2 3 20 20 H 1.09001 * 109.47216 * 59.99671 * 1 2 3 21 21 H 1.08993 * 109.47678 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46975 * 239.99790 * 2 1 3 23 23 H 1.08992 * 109.47704 * 177.63533 * 3 2 1 24 24 H 1.09003 * 109.46996 * 297.63659 * 3 2 1 25 25 H 1.08998 * 109.47117 * 57.62844 * 3 2 1 26 26 H 0.96999 * 120.00002 * 179.97438 * 9 8 6 27 27 H 1.09000 * 110.81845 * 340.93940 * 16 14 4 28 28 H 1.08999 * 110.81933 * 103.86788 * 16 14 4 29 29 H 1.09001 * 114.34837 * 270.76038 * 17 16 14 30 30 H 1.09009 * 114.39295 * 137.56876 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5926 -0.2723 2.1360 6 6 3.5398 -0.5955 1.3248 7 1 4.1566 -1.0084 0.5402 8 6 4.1247 0.0465 2.3956 9 7 3.3840 0.4517 3.4040 10 14 5.9693 0.3412 2.4140 11 1 6.2674 1.6523 1.7836 12 1 6.4560 0.3445 3.8169 13 1 6.6506 -0.7389 1.6561 14 6 1.6552 -2.2003 1.1770 15 1 0.6228 -2.3646 0.8685 16 6 2.0995 -3.0419 2.4118 17 6 2.6348 -4.3556 1.7636 18 16 2.8781 -3.2583 0.3183 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1292 1.4427 0.0424 24 1 1.7118 1.9439 -0.9104 25 1 1.6425 1.9684 0.8679 26 1 3.7956 0.9031 4.1575 27 1 2.8891 -2.5324 2.9640 28 1 1.2517 -3.2488 3.0649 29 1 1.8781 -5.1270 1.6207 30 1 3.5586 -4.7310 2.2041 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485904.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -1.904620 kcal Electronic energy + Delta-G solvation = -11572.865835 eV Core-core repulsion = 9687.323485 eV Total energy + Delta-G solvation = -1885.542350 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -36.66627 -33.58275 -32.12003 -28.29170 -26.54108 -24.52376 -22.49630 -20.15018 -18.72497 -16.74735 -15.42633 -14.61964 -14.30211 -13.35750 -13.32345 -12.53372 -12.36631 -12.14356 -11.84571 -11.48457 -11.29488 -10.88336 -10.82051 -10.54898 -10.37681 -10.14685 -9.91826 -9.57477 -9.14230 -8.87807 -8.44543 -8.12977 -6.57708 -5.96467 -3.92286 2.62320 3.18350 3.34679 3.42217 3.48713 4.50838 5.30299 5.40383 5.50766 5.67577 5.88369 6.02309 6.05397 6.11415 6.24326 6.40247 6.50766 6.66114 6.73540 6.78047 7.04229 7.15232 7.21295 7.41717 7.59316 7.82354 8.01375 8.48536 9.17998 9.67161 11.12900 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.018371 C = 0.012875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.563802 B = 1523.747230 C = 2174.263726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.122 4.122 4 C 0.048 3.952 5 H 0.083 0.917 6 C -0.482 4.482 7 H 0.067 0.933 8 C 0.066 3.934 9 N -0.900 5.900 10 Si 0.881 3.119 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.272 1.272 14 C -0.012 4.012 15 H 0.081 0.919 16 C -0.129 4.129 17 C -0.087 4.087 18 S -0.322 6.322 19 H 0.049 0.951 20 H 0.036 0.964 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.044 0.956 26 H 0.259 0.741 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 -3.785 -2.189 5.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.180 4.180 4 C 0.028 3.972 5 H 0.101 0.899 6 C -0.520 4.520 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.539 5.539 10 Si 0.709 3.291 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.197 1.197 14 C -0.140 4.140 15 H 0.099 0.901 16 C -0.168 4.168 17 C -0.235 4.235 18 S -0.097 6.097 19 H 0.068 0.932 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.128 0.872 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.002 -3.690 -3.148 5.704 hybrid contribution 0.371 0.081 1.052 1.119 sum -2.631 -3.610 -2.095 4.934 Atomic orbital electron populations 1.21953 0.98018 1.00194 1.00240 1.21174 0.92452 0.96841 0.99990 1.21584 1.02532 0.95528 0.98327 1.18962 0.97089 0.86162 0.94972 0.89925 1.21075 0.90672 1.33915 1.06383 0.91530 1.24886 0.97330 0.95737 0.95531 1.69884 1.35066 1.40936 1.08016 0.86748 0.86646 0.78698 0.76974 1.20855 1.21603 1.19706 1.24986 0.94992 1.00760 0.93289 0.90086 1.23477 1.02242 0.92063 0.98990 1.24482 1.03311 0.98261 0.97480 1.88073 1.62130 1.23822 1.35629 0.93222 0.94456 0.93733 0.93511 0.91504 0.95969 0.93642 0.93148 0.87166 0.93064 0.89685 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.01 37.16 0.33 -2.28 16 2 C -0.09 -1.79 2.50 -90.62 -0.23 -2.02 16 3 C -0.12 -2.57 8.91 37.16 0.33 -2.24 16 4 C 0.05 1.11 1.85 -91.77 -0.17 0.94 16 5 H 0.08 2.14 6.92 -51.93 -0.36 1.78 16 6 C -0.48 -12.37 4.79 -34.44 -0.17 -12.53 16 7 H 0.07 1.81 6.90 -52.49 -0.36 1.45 16 8 C 0.07 1.74 5.45 -17.82 -0.10 1.64 16 9 N -0.90 -24.65 12.62 55.43 0.70 -23.95 16 10 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C -0.01 -0.25 4.21 -25.19 -0.11 -0.35 16 15 H 0.08 1.56 6.39 -51.93 -0.33 1.22 16 16 C -0.13 -2.56 6.39 -23.60 -0.15 -2.71 16 17 C -0.09 -1.51 9.09 38.74 0.35 -1.16 16 18 S -0.32 -6.79 21.72 -107.50 -2.33 -9.13 16 19 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.04 0.75 6.44 -51.93 -0.33 0.41 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.07 1.53 6.96 -51.93 -0.36 1.17 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.11 2.54 7.33 -51.93 -0.38 2.16 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 LS Contribution 251.78 15.07 3.79 3.79 Total: -1.00 -26.64 251.78 -7.41 -34.04 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.65 Total: -0.19 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 0.10 Total: -20.71 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.70 Total: -23.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -2.33 Total: -9.13 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.64 -7.41 -34.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485904.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.140 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds