Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47675 * 2 1 4 4 C 1.53003 * 109.46985 * 119.99987 * 2 1 3 5 5 H 1.08994 * 109.47159 * 305.92227 * 4 2 1 6 6 C 1.50706 * 109.47111 * 185.92460 * 4 2 1 7 7 H 1.08001 * 120.00133 * 298.48015 * 6 4 2 8 8 C 1.37872 * 119.99978 * 118.47742 * 6 4 2 9 9 N 1.31519 * 120.00182 * 5.61282 * 8 6 4 10 10 Si 1.86806 * 120.00069 * 185.61717 * 8 6 4 11 11 H 1.48500 * 109.46943 * 89.99807 * 10 8 6 12 12 H 1.48495 * 109.46881 * 209.99606 * 10 8 6 13 13 H 1.48496 * 109.46929 * 329.99773 * 10 8 6 14 14 C 1.52997 * 109.47091 * 65.92719 * 4 2 1 15 15 H 1.09001 * 113.40848 * 314.66455 * 14 4 2 16 16 C 1.55892 * 114.38094 * 181.03236 * 14 4 2 17 17 C 1.55968 * 102.90837 * 222.42379 * 16 14 4 18 18 S 1.83086 * 82.46320 * 24.16623 * 17 16 14 19 19 H 1.09004 * 109.46975 * 300.00210 * 1 2 3 20 20 H 1.09001 * 109.47216 * 59.99671 * 1 2 3 21 21 H 1.08993 * 109.47678 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46975 * 239.99790 * 2 1 3 23 23 H 1.08992 * 109.47704 * 177.63533 * 3 2 1 24 24 H 1.09003 * 109.46996 * 297.63659 * 3 2 1 25 25 H 1.08998 * 109.47117 * 57.62844 * 3 2 1 26 26 H 0.96999 * 120.00002 * 179.97438 * 9 8 6 27 27 H 1.09000 * 110.81845 * 340.93940 * 16 14 4 28 28 H 1.08999 * 110.81933 * 103.86788 * 16 14 4 29 29 H 1.09001 * 114.34837 * 270.76038 * 17 16 14 30 30 H 1.09009 * 114.39295 * 137.56876 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5926 -0.2723 2.1360 6 6 3.5398 -0.5955 1.3248 7 1 4.1566 -1.0084 0.5402 8 6 4.1247 0.0465 2.3956 9 7 3.3840 0.4517 3.4040 10 14 5.9693 0.3412 2.4140 11 1 6.2674 1.6523 1.7836 12 1 6.4560 0.3445 3.8169 13 1 6.6506 -0.7389 1.6561 14 6 1.6552 -2.2003 1.1770 15 1 0.6228 -2.3646 0.8685 16 6 2.0995 -3.0419 2.4118 17 6 2.6348 -4.3556 1.7636 18 16 2.8781 -3.2583 0.3183 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1292 1.4427 0.0424 24 1 1.7118 1.9439 -0.9104 25 1 1.6425 1.9684 0.8679 26 1 3.7956 0.9031 4.1575 27 1 2.8891 -2.5324 2.9640 28 1 1.2517 -3.2488 3.0649 29 1 1.8781 -5.1270 1.6207 30 1 3.5586 -4.7310 2.2041 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485904.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -15.226779 kcal Electronic energy + Delta-G solvation = -11573.443527 eV Core-core repulsion = 9687.323485 eV Total energy + Delta-G solvation = -1886.120042 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.39336 -35.15531 -34.09399 -30.01320 -28.18020 -26.31852 -24.18684 -21.77240 -20.46598 -18.66952 -17.12270 -16.45050 -16.03380 -15.05750 -14.93536 -14.21525 -14.03456 -13.79831 -13.56666 -13.01528 -12.88295 -12.78115 -12.63110 -12.38842 -11.98568 -11.87858 -11.70142 -11.26149 -10.97754 -10.69928 -10.45521 -9.79972 -8.24389 -8.00486 -5.98167 1.08038 1.40076 1.44300 1.52582 1.59576 2.51448 3.29848 3.87129 3.94186 4.19610 4.35907 4.47382 4.53855 4.64123 4.70186 4.89267 4.97762 5.04844 5.12696 5.23641 5.36072 5.46557 5.49830 5.67910 5.87487 5.88796 5.96936 6.52290 7.13427 7.61769 9.08290 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.018371 C = 0.012875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.563802 B = 1523.747230 C = 2174.263726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.117 4.117 4 C 0.048 3.952 5 H 0.055 0.945 6 C -0.473 4.473 7 H 0.049 0.951 8 C 0.027 3.973 9 N -0.924 5.924 10 Si 0.924 3.076 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.276 1.276 14 C -0.007 4.007 15 H 0.104 0.896 16 C -0.130 4.130 17 C -0.053 4.053 18 S -0.381 6.381 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.256 0.744 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 -4.768 -2.592 7.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 C -0.174 4.174 4 C 0.028 3.972 5 H 0.073 0.927 6 C -0.512 4.512 7 H 0.067 0.933 8 C -0.170 4.170 9 N -0.565 5.565 10 Si 0.752 3.248 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.136 4.136 15 H 0.122 0.878 16 C -0.169 4.169 17 C -0.201 4.201 18 S -0.157 6.157 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.960 -4.675 -3.556 7.084 hybrid contribution 0.666 0.345 1.153 1.376 sum -3.294 -4.330 -2.403 5.947 Atomic orbital electron populations 1.21848 0.95149 1.01335 1.01239 1.21115 0.94921 0.96134 0.98284 1.21507 1.00652 0.96032 0.99223 1.18862 0.95377 0.88052 0.94880 0.92713 1.21133 0.92117 1.32673 1.05261 0.93321 1.25333 0.99829 0.96230 0.95645 1.69972 1.35919 1.42172 1.08449 0.86072 0.83717 0.78279 0.76724 1.20740 1.21464 1.20155 1.24884 0.95764 0.99117 0.93800 0.87840 1.23360 1.01904 0.92870 0.98746 1.24639 1.04605 0.97538 0.93336 1.88277 1.62986 1.26129 1.38264 0.93393 0.92278 0.92538 0.94348 0.94223 0.93126 0.94764 0.93453 0.90942 0.90742 0.85999 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.01 71.98 0.65 -3.96 16 2 C -0.09 -3.51 2.50 -10.79 -0.03 -3.53 16 3 C -0.12 -4.84 8.91 71.98 0.64 -4.20 16 4 C 0.05 2.22 1.85 -11.54 -0.02 2.20 16 5 H 0.05 2.86 6.92 -2.39 -0.02 2.84 16 6 C -0.47 -24.58 4.79 25.60 0.12 -24.46 16 7 H 0.05 2.69 6.90 -2.91 -0.02 2.67 16 8 C 0.03 1.45 5.45 84.65 0.46 1.92 16 9 N -0.92 -51.47 12.62 21.45 0.27 -51.20 16 10 Si 0.92 43.98 29.54 68.60 2.03 46.01 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 C -0.01 -0.30 4.21 31.59 0.13 -0.16 16 15 H 0.10 3.69 6.39 -2.39 -0.02 3.68 16 16 C -0.13 -4.93 6.39 32.62 0.21 -4.72 16 17 C -0.05 -1.69 9.09 73.01 0.66 -1.03 16 18 S -0.38 -15.62 21.72 -56.49 -1.23 -16.85 16 19 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.06 1.73 6.44 -2.39 -0.02 1.71 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.04 1.82 6.96 -2.39 -0.02 1.80 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 27 H 0.07 3.32 7.33 -2.39 -0.02 3.30 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 29 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -57.12 251.78 5.00 -52.13 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.09 Total: 7.85 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.83 Total: -37.94 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.27 Total: -51.20 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -15.62 SS G_CDS: -1.23 Total: -16.85 kcal Total: -57.12 5.00 -52.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485904.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.900 kcal (2) G-P(sol) polarization free energy of solvation -57.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds