Wall clock time and date at job start Mon Mar 30 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 C 1.53000 * 109.47245 * 120.00003 * 2 1 3 5 5 H 1.09005 * 109.46921 * 294.49939 * 4 2 1 6 6 C 1.50698 * 109.47008 * 54.49724 * 4 2 1 7 7 H 1.08003 * 119.99871 * 54.60191 * 6 4 2 8 8 C 1.37879 * 120.00143 * 234.60812 * 6 4 2 9 9 N 1.31517 * 119.99988 * 5.63218 * 8 6 4 10 10 Si 1.86798 * 120.00023 * 185.64033 * 8 6 4 11 11 H 1.48494 * 109.47337 * 89.99417 * 10 8 6 12 12 H 1.48503 * 109.47157 * 209.99682 * 10 8 6 13 13 H 1.48501 * 109.47109 * 329.99476 * 10 8 6 14 14 C 1.52998 * 109.47503 * 174.49903 * 4 2 1 15 15 H 1.09001 * 112.49130 * 50.33016 * 14 4 2 16 16 C 1.53040 * 113.14910 * 180.10798 * 14 4 2 17 17 C 1.53042 * 89.86618 * 148.19471 * 16 14 4 18 18 S 1.81425 * 113.14671 * 280.56167 * 14 4 2 19 19 H 1.09000 * 109.47563 * 294.54700 * 1 2 3 20 20 H 1.09005 * 109.46937 * 54.54304 * 1 2 3 21 21 H 1.08997 * 109.47143 * 174.54437 * 1 2 3 22 22 H 1.09001 * 109.47173 * 240.00477 * 2 1 3 23 23 H 1.09000 * 109.47256 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47389 * 300.00026 * 3 2 1 25 25 H 1.09004 * 109.47187 * 60.00171 * 3 2 1 26 26 H 0.96997 * 119.99610 * 180.02562 * 9 8 6 27 27 H 1.09000 * 113.14983 * 263.44769 * 16 14 4 28 28 H 1.08993 * 113.15181 * 32.89958 * 16 14 4 29 29 H 1.08998 * 113.14836 * 82.35934 * 17 16 14 30 30 H 1.08998 * 113.15083 * 211.81020 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7593 -0.1536 2.1365 6 6 1.4295 -2.0973 1.3192 7 1 1.5268 -2.7743 0.4834 8 6 0.7467 -2.4918 2.4502 9 7 0.5322 -1.6323 3.4222 10 14 0.1265 -4.2473 2.6020 11 1 1.1707 -5.0878 3.2408 12 1 -1.1031 -4.2676 3.4344 13 1 -0.1814 -4.7820 1.2512 14 6 3.5637 -0.8421 1.1821 15 1 4.0482 0.1090 0.9614 16 6 4.1646 -1.5563 2.3949 17 6 5.2807 -2.1144 1.5089 18 16 4.1253 -2.1940 0.1104 19 1 -0.3634 0.4269 0.9348 20 1 -0.3633 0.5962 -0.8371 21 1 -0.3633 -1.0230 -0.0977 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 0.0521 -1.9100 4.2180 27 1 4.5276 -0.8699 3.1600 28 1 3.5136 -2.3293 2.8031 29 1 6.0961 -1.4084 1.3511 30 1 5.6337 -3.0942 1.8304 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485906.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:20 Heat of formation + Delta-G solvation = -14.837294 kcal Electronic energy + Delta-G solvation = -11623.752008 eV Core-core repulsion = 9737.648855 eV Total energy + Delta-G solvation = -1886.103153 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.70676 -35.69499 -34.12985 -29.87034 -28.12466 -26.10342 -23.95343 -22.20031 -20.45124 -18.68718 -17.16090 -16.49749 -15.95058 -15.02706 -14.95710 -14.35421 -13.98520 -13.72349 -13.50576 -12.99013 -12.84879 -12.80348 -12.61103 -12.40599 -12.00948 -11.80784 -11.63720 -11.15555 -10.88751 -10.75089 -10.36658 -10.28549 -8.30063 -8.00482 -5.98844 1.27762 1.40430 1.42717 1.44803 1.52456 2.51063 3.29418 3.85962 4.10249 4.33037 4.39588 4.47768 4.60904 4.64649 4.68737 4.92609 5.00585 5.04360 5.11990 5.23156 5.37752 5.48096 5.53357 5.66032 5.83823 5.89960 5.97471 6.52528 7.12153 7.61241 9.08052 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.018407 C = 0.013109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.153080 B = 1520.766110 C = 2135.446964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.138 4.138 4 C 0.043 3.957 5 H 0.054 0.946 6 C -0.473 4.473 7 H 0.042 0.958 8 C 0.029 3.971 9 N -0.921 5.921 10 Si 0.924 3.076 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.279 1.279 14 C -0.024 4.024 15 H 0.101 0.899 16 C -0.108 4.108 17 C -0.064 4.064 18 S -0.363 6.363 19 H 0.034 0.966 20 H 0.049 0.951 21 H 0.034 0.966 22 H 0.036 0.964 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.257 0.743 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 3.201 -2.319 7.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.106 4.106 3 C -0.195 4.195 4 C 0.023 3.977 5 H 0.072 0.928 6 C -0.512 4.512 7 H 0.060 0.940 8 C -0.169 4.169 9 N -0.562 5.562 10 Si 0.752 3.248 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.205 1.205 14 C -0.153 4.153 15 H 0.119 0.881 16 C -0.147 4.147 17 C -0.212 4.212 18 S -0.139 6.139 19 H 0.053 0.947 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.136 0.864 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.980 2.489 -3.380 7.306 hybrid contribution -0.414 -0.622 1.105 1.334 sum 5.565 1.867 -2.275 6.296 Atomic orbital electron populations 1.21461 0.96050 1.00121 0.99411 1.21133 0.95604 0.95490 0.98398 1.21839 1.00674 0.95789 1.01187 1.18959 0.88307 0.95653 0.94759 0.92819 1.21051 1.31241 0.98979 0.99941 0.93991 1.25310 0.96478 0.98826 0.96285 1.69973 1.43393 1.34611 1.08225 0.86076 0.77730 0.83424 0.77520 1.20475 1.21551 1.20476 1.24551 1.02572 0.95456 0.92672 0.88129 1.22629 0.95038 1.00092 0.96907 1.24140 0.99012 1.05229 0.92796 1.88781 1.36346 1.50185 1.38561 0.94724 0.93161 0.94632 0.94566 0.92567 0.92416 0.93317 0.93383 0.89295 0.90498 0.86400 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 8.74 71.98 0.63 -4.10 16 2 C -0.09 -3.61 2.48 -10.79 -0.03 -3.64 16 3 C -0.14 -4.62 8.99 71.98 0.65 -3.97 16 4 C 0.04 1.97 1.74 -11.54 -0.02 1.95 16 5 H 0.05 2.78 6.93 -2.38 -0.02 2.77 16 6 C -0.47 -24.59 4.85 25.60 0.12 -24.47 16 7 H 0.04 2.33 7.19 -2.91 -0.02 2.31 16 8 C 0.03 1.54 5.21 84.65 0.44 1.98 16 9 N -0.92 -51.00 12.62 21.45 0.27 -50.73 16 10 Si 0.92 43.92 29.54 68.60 2.03 45.95 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 14 C -0.02 -0.96 3.24 30.61 0.10 -0.86 16 15 H 0.10 3.53 6.43 -2.39 -0.02 3.51 16 16 C -0.11 -4.01 7.05 30.62 0.22 -3.79 16 17 C -0.06 -2.00 7.99 72.00 0.58 -1.43 16 18 S -0.36 -14.73 22.55 -56.49 -1.27 -16.01 16 19 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 20 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.03 1.62 7.29 -2.39 -0.02 1.60 16 22 H 0.04 1.57 8.00 -2.39 -0.02 1.55 16 23 H 0.06 1.74 6.46 -2.39 -0.02 1.72 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 27 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.08 3.45 7.04 -2.39 -0.02 3.43 16 29 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -56.85 250.96 4.80 -52.05 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.09 Total: 7.06 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 2.69 Total: -38.32 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.27 Total: -50.73 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -14.73 SS G_CDS: -1.27 Total: -16.01 kcal Total: -56.85 4.80 -52.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485906.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.211 kcal (2) G-P(sol) polarization free energy of solvation -56.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds