Wall clock time and date at job start Mon Mar 30 2020 03:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47046 * 2 1 4 4 C 1.50700 * 109.47038 * 119.99919 * 2 1 3 5 5 H 1.07994 * 119.99816 * 95.29198 * 4 2 1 6 6 C 1.37882 * 120.00126 * 275.29953 * 4 2 1 7 7 N 1.31514 * 119.99732 * 355.26310 * 6 4 2 8 8 Si 1.86796 * 119.99863 * 175.27275 * 6 4 2 9 9 H 1.48494 * 109.47247 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46987 * 239.99565 * 8 6 4 11 11 H 1.48503 * 109.47159 * 119.99797 * 8 6 4 12 12 C 1.52997 * 109.47232 * 240.00161 * 2 1 3 13 13 H 1.09006 * 109.57265 * 299.74033 * 12 2 1 14 14 C 1.53097 * 109.57907 * 59.99819 * 12 2 1 15 15 C 1.52578 * 109.95961 * 182.83371 * 14 12 2 16 16 C 1.52590 * 110.72206 * 289.32579 * 15 14 12 17 17 C 1.53102 * 109.95745 * 70.67793 * 16 15 14 18 18 S 1.81742 * 109.57470 * 179.35812 * 12 2 1 19 19 H 1.08997 * 109.47070 * 294.41435 * 1 2 3 20 20 H 1.09006 * 109.47066 * 54.40816 * 1 2 3 21 21 H 1.08996 * 109.47061 * 174.40470 * 1 2 3 22 22 H 0.96998 * 120.00295 * 5.32320 * 7 6 4 23 23 H 1.08999 * 109.39060 * 302.98904 * 14 12 2 24 24 H 1.09007 * 109.38424 * 62.78484 * 14 12 2 25 25 H 1.09003 * 109.22776 * 49.64328 * 15 14 12 26 26 H 1.08995 * 109.22868 * 169.00777 * 15 14 12 27 27 H 1.09002 * 109.38482 * 190.82217 * 16 15 14 28 28 H 1.08990 * 109.39422 * 310.52586 * 16 15 14 29 29 H 1.09000 * 109.57349 * 56.77520 * 17 16 15 30 30 H 1.08999 * 109.57680 * 177.03435 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2936 -1.7571 1.1808 6 6 2.1582 -0.0241 2.4197 7 7 1.9294 1.2704 2.4592 8 14 2.6538 -0.9329 3.9746 9 1 2.8515 -2.3718 3.6652 10 1 1.5841 -0.7887 4.9945 11 1 3.9193 -0.3607 4.5003 12 6 2.0400 -0.7212 -1.2492 13 1 1.6814 -1.7506 -1.2486 14 6 1.5311 -0.0014 -2.5009 15 6 1.9762 -0.7536 -3.7515 16 6 3.4805 -0.6084 -3.9622 17 6 4.2368 -1.4053 -2.8959 18 16 3.8574 -0.7062 -1.2617 19 1 -0.3633 0.4248 0.9357 20 1 -0.3633 0.5981 -0.8357 21 1 -0.3633 -1.0227 -0.1002 22 1 1.5978 1.7286 1.6712 23 1 0.4424 0.0445 -2.4744 24 1 1.9354 1.0106 -2.5259 25 1 1.7294 -1.8097 -3.6421 26 1 1.4519 -0.3511 -4.6182 27 1 3.7453 -0.9842 -4.9505 28 1 3.7560 0.4437 -3.8909 29 1 3.9228 -2.4486 -2.9286 30 1 5.3086 -1.3404 -3.0832 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260498821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:33 Heat of formation + Delta-G solvation = -34.341653 kcal Electronic energy + Delta-G solvation = -11371.802620 eV Core-core repulsion = 9484.853694 eV Total energy + Delta-G solvation = -1886.948926 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.00347 -34.66051 -31.62543 -29.00099 -26.13599 -24.88991 -22.71110 -20.43826 -19.73997 -16.65937 -16.19002 -14.77872 -14.14310 -13.70009 -13.62736 -13.10115 -12.83863 -12.75152 -12.21539 -11.41724 -11.17908 -11.05102 -10.94961 -10.67109 -10.55811 -10.43181 -10.06334 -9.81004 -9.38523 -8.89277 -8.37874 -8.21681 -6.82194 -6.27098 -3.96081 2.52707 3.43508 3.49498 3.53424 3.67134 4.59602 4.95318 5.05152 5.21395 5.44808 5.49083 5.61410 5.76149 5.86720 5.97368 6.08537 6.17986 6.26643 6.33306 6.43706 6.54840 6.65000 6.82364 6.90465 7.35631 7.56354 8.25701 8.53904 8.95499 9.73577 11.11766 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048456 B = 0.011465 C = 0.010011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.700077 B = 2441.593782 C = 2796.334304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.041 3.959 3 H 0.040 0.960 4 C -0.581 4.581 5 H 0.052 0.948 6 C 0.022 3.978 7 N -0.915 5.915 8 Si 1.070 2.930 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.287 1.287 12 C -0.023 4.023 13 H 0.069 0.931 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.117 4.117 17 C -0.109 4.109 18 S -0.228 6.228 19 H 0.049 0.951 20 H 0.021 0.979 21 H 0.036 0.964 22 H 0.269 0.731 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -3.734 -10.642 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.021 3.979 3 H 0.058 0.942 4 C -0.620 4.620 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.899 3.101 9 H -0.215 1.215 10 H -0.216 1.216 11 H -0.214 1.214 12 C -0.152 4.152 13 H 0.088 0.912 14 C -0.162 4.162 15 C -0.165 4.165 16 C -0.156 4.156 17 C -0.258 4.258 18 S 0.001 5.999 19 H 0.068 0.932 20 H 0.040 0.960 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.691 -3.195 -8.256 9.013 hybrid contribution -1.231 -0.739 -2.570 2.944 sum 0.460 -3.934 -10.826 11.528 Atomic orbital electron populations 1.21969 0.98834 0.99055 0.99173 1.18756 0.91551 0.96694 0.90925 0.94238 1.21891 1.47270 0.98230 0.94619 0.92968 1.25720 0.94897 0.96028 1.01570 1.70729 1.42547 1.08277 1.33596 0.83533 0.76634 0.74781 0.75160 1.21493 1.21604 1.21392 1.23347 0.91197 1.01954 0.98687 0.91230 1.21932 1.01155 0.99770 0.93310 1.21538 0.95704 1.00783 0.98432 1.21678 0.95277 1.00922 0.97727 1.23501 1.02979 1.01650 0.97645 1.87441 1.10343 1.84002 1.18125 0.93160 0.95990 0.94516 0.91917 0.91112 0.91320 0.92319 0.92036 0.92133 0.91053 0.91025 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.66 37.16 0.32 -2.59 16 2 C 0.04 0.99 1.62 -91.77 -0.15 0.85 16 3 H 0.04 1.07 6.68 -51.93 -0.35 0.73 16 4 C -0.58 -16.15 7.51 -34.44 -0.26 -16.41 16 5 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 6 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 7 N -0.91 -27.72 13.62 55.43 0.76 -26.97 16 8 Si 1.07 25.92 29.91 -169.99 -5.08 20.84 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 C -0.02 -0.48 2.12 -26.68 -0.06 -0.54 16 13 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.12 -2.10 4.77 -26.90 -0.13 -2.23 16 15 C -0.13 -1.80 5.61 -27.16 -0.15 -1.95 16 16 C -0.12 -1.60 5.75 -26.89 -0.15 -1.76 16 17 C -0.11 -1.70 6.46 37.21 0.24 -1.46 16 18 S -0.23 -4.79 20.95 -107.50 -2.25 -7.04 16 19 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 20 H 0.02 0.42 6.68 -51.93 -0.35 0.07 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.27 8.11 6.66 -40.82 -0.27 7.84 16 23 H 0.07 1.16 6.41 -51.93 -0.33 0.83 16 24 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 25 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 249.18 15.07 3.76 3.76 Total: -1.00 -29.61 249.18 -7.98 -37.59 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.72 Total: -2.62 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -0.43 Total: -25.56 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.76 Total: -26.97 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -2.25 Total: -7.04 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.61 -7.98 -37.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.252 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds