Wall clock time and date at job start Mon Mar 30 2020 03:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47046 * 2 1 4 4 C 1.50700 * 109.47038 * 119.99919 * 2 1 3 5 5 H 1.07994 * 119.99816 * 95.29198 * 4 2 1 6 6 C 1.37882 * 120.00126 * 275.29953 * 4 2 1 7 7 N 1.31514 * 119.99732 * 355.26310 * 6 4 2 8 8 Si 1.86796 * 119.99863 * 175.27275 * 6 4 2 9 9 H 1.48494 * 109.47247 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46987 * 239.99565 * 8 6 4 11 11 H 1.48503 * 109.47159 * 119.99797 * 8 6 4 12 12 C 1.52997 * 109.47232 * 240.00161 * 2 1 3 13 13 H 1.09006 * 109.57265 * 299.74033 * 12 2 1 14 14 C 1.53097 * 109.57907 * 59.99819 * 12 2 1 15 15 C 1.52578 * 109.95961 * 182.83371 * 14 12 2 16 16 C 1.52590 * 110.72206 * 289.32579 * 15 14 12 17 17 C 1.53102 * 109.95745 * 70.67793 * 16 15 14 18 18 S 1.81742 * 109.57470 * 179.35812 * 12 2 1 19 19 H 1.08997 * 109.47070 * 294.41435 * 1 2 3 20 20 H 1.09006 * 109.47066 * 54.40816 * 1 2 3 21 21 H 1.08996 * 109.47061 * 174.40470 * 1 2 3 22 22 H 0.96998 * 120.00295 * 5.32320 * 7 6 4 23 23 H 1.08999 * 109.39060 * 302.98904 * 14 12 2 24 24 H 1.09007 * 109.38424 * 62.78484 * 14 12 2 25 25 H 1.09003 * 109.22776 * 49.64328 * 15 14 12 26 26 H 1.08995 * 109.22868 * 169.00777 * 15 14 12 27 27 H 1.09002 * 109.38482 * 190.82217 * 16 15 14 28 28 H 1.08990 * 109.39422 * 310.52586 * 16 15 14 29 29 H 1.09000 * 109.57349 * 56.77520 * 17 16 15 30 30 H 1.08999 * 109.57680 * 177.03435 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2936 -1.7571 1.1808 6 6 2.1582 -0.0241 2.4197 7 7 1.9294 1.2704 2.4592 8 14 2.6538 -0.9329 3.9746 9 1 2.8515 -2.3718 3.6652 10 1 1.5841 -0.7887 4.9945 11 1 3.9193 -0.3607 4.5003 12 6 2.0400 -0.7212 -1.2492 13 1 1.6814 -1.7506 -1.2486 14 6 1.5311 -0.0014 -2.5009 15 6 1.9762 -0.7536 -3.7515 16 6 3.4805 -0.6084 -3.9622 17 6 4.2368 -1.4053 -2.8959 18 16 3.8574 -0.7062 -1.2617 19 1 -0.3633 0.4248 0.9357 20 1 -0.3633 0.5981 -0.8357 21 1 -0.3633 -1.0227 -0.1002 22 1 1.5978 1.7286 1.6712 23 1 0.4424 0.0445 -2.4744 24 1 1.9354 1.0106 -2.5259 25 1 1.7294 -1.8097 -3.6421 26 1 1.4519 -0.3511 -4.6182 27 1 3.7453 -0.9842 -4.9505 28 1 3.7560 0.4437 -3.8909 29 1 3.9228 -2.4486 -2.9286 30 1 5.3086 -1.3404 -3.0832 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260498821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:32 Heat of formation + Delta-G solvation = -50.736551 kcal Electronic energy + Delta-G solvation = -11372.513556 eV Core-core repulsion = 9484.853694 eV Total energy + Delta-G solvation = -1887.659862 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -38.50411 -36.34556 -33.50927 -30.52881 -27.67246 -26.86644 -24.32957 -21.76537 -21.47163 -18.69267 -17.79122 -16.21040 -15.72433 -15.48636 -15.25909 -14.54698 -14.46906 -14.24760 -13.71061 -13.23555 -12.92592 -12.63236 -12.53431 -12.31792 -12.06381 -11.95805 -11.80549 -11.53727 -10.99683 -10.67605 -10.40161 -10.19412 -8.55102 -8.47368 -6.21827 1.02794 1.51354 1.60100 1.76306 1.93848 2.58816 3.26827 3.76338 3.88259 3.96125 4.15546 4.27842 4.37658 4.53241 4.69193 4.73814 4.77596 4.93213 4.94180 5.03690 5.06954 5.09873 5.17023 5.33643 5.43812 5.63934 6.12610 6.28483 6.71212 7.54063 8.85569 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048456 B = 0.011465 C = 0.010011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.700077 B = 2441.593782 C = 2796.334304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.035 3.965 3 H 0.006 0.994 4 C -0.581 4.581 5 H 0.039 0.961 6 C -0.031 4.031 7 N -0.943 5.943 8 Si 1.110 2.890 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.285 1.285 12 C -0.009 4.009 13 H 0.064 0.936 14 C -0.117 4.117 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.085 4.085 18 S -0.316 6.316 19 H 0.023 0.977 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.258 0.742 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -4.941 -12.627 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.016 3.984 3 H 0.024 0.976 4 C -0.619 4.619 5 H 0.058 0.942 6 C -0.228 4.228 7 N -0.582 5.582 8 Si 0.934 3.066 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.211 1.211 12 C -0.137 4.137 13 H 0.083 0.917 14 C -0.157 4.157 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.233 4.233 18 S -0.088 6.088 19 H 0.042 0.958 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.578 -4.411 -10.256 11.275 hybrid contribution -1.157 -0.400 -2.053 2.390 sum 0.421 -4.811 -12.309 13.222 Atomic orbital electron populations 1.21790 0.97032 1.00058 0.99052 1.18722 0.92966 0.94863 0.91875 0.97574 1.22141 1.46214 0.97633 0.95948 0.94219 1.26987 0.94925 0.96112 1.04791 1.70841 1.44890 1.09232 1.33190 0.83014 0.76656 0.74513 0.72457 1.19950 1.20497 1.21136 1.23125 0.90485 1.01375 0.98742 0.91741 1.21877 1.01498 0.99173 0.93105 1.21525 0.96284 1.00657 0.97519 1.21683 0.94631 1.00390 0.98623 1.23559 1.04396 1.01847 0.93502 1.87617 1.11693 1.85043 1.24483 0.95787 0.92995 0.93409 0.93190 0.90172 0.92397 0.91826 0.89134 0.88360 0.91729 0.89962 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.66 71.98 0.62 -4.70 16 2 C 0.04 1.77 1.62 -11.54 -0.02 1.75 16 3 H 0.01 0.34 6.68 -2.38 -0.02 0.33 16 4 C -0.58 -32.93 7.51 25.60 0.19 -32.73 16 5 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 6 C -0.03 -1.79 5.45 84.66 0.46 -1.33 16 7 N -0.94 -58.86 13.62 21.45 0.29 -58.57 16 8 Si 1.11 52.73 29.91 68.60 2.05 54.79 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 C -0.01 -0.36 2.12 30.63 0.06 -0.29 16 13 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 14 C -0.12 -3.80 4.77 30.49 0.15 -3.65 16 15 C -0.12 -2.99 5.61 30.32 0.17 -2.82 16 16 C -0.11 -2.68 5.75 30.49 0.18 -2.51 16 17 C -0.08 -2.40 6.46 72.02 0.46 -1.93 16 18 S -0.32 -13.26 20.95 -56.49 -1.18 -14.44 16 19 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 20 H 0.05 1.95 6.68 -2.38 -0.02 1.94 16 21 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.26 16.19 6.66 -92.71 -0.62 15.58 16 23 H 0.08 2.42 6.41 -2.39 -0.02 2.41 16 24 H 0.06 1.99 8.05 -2.38 -0.02 1.97 16 25 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.64 8.05 -2.39 -0.02 1.62 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 30 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -65.67 249.18 4.68 -60.99 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.24 Total: 5.45 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 2.28 Total: -48.21 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.29 Total: -58.57 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 2.05 Total: 54.79 kcal Atomic # 16 Polarization: -13.26 SS G_CDS: -1.18 Total: -14.44 kcal Total: -65.67 4.68 -60.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.255 kcal (2) G-P(sol) polarization free energy of solvation -65.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds