Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47203 * 2 1 4 4 C 1.50692 * 109.47098 * 240.00032 * 2 1 3 5 5 H 1.07998 * 120.00462 * 275.02989 * 4 2 1 6 6 C 1.37879 * 120.00065 * 95.03179 * 4 2 1 7 7 N 1.31516 * 120.00007 * 184.84109 * 6 4 2 8 8 Si 1.86802 * 120.00076 * 4.84020 * 6 4 2 9 9 H 1.48499 * 109.47085 * 84.68613 * 8 6 4 10 10 H 1.48490 * 109.47126 * 204.68792 * 8 6 4 11 11 H 1.48501 * 109.46630 * 324.68890 * 8 6 4 12 12 C 1.52999 * 109.46816 * 120.00100 * 2 1 3 13 13 H 1.09006 * 109.57613 * 180.02562 * 12 2 1 14 14 C 1.53097 * 109.57812 * 300.25640 * 12 2 1 15 15 C 1.52559 * 109.96805 * 182.70298 * 14 12 2 16 16 C 1.52581 * 110.84233 * 289.51709 * 15 14 12 17 17 C 1.53096 * 109.95594 * 70.62727 * 16 15 14 18 18 S 1.81741 * 109.57812 * 59.74281 * 12 2 1 19 19 H 1.09006 * 109.46928 * 55.56669 * 1 2 3 20 20 H 1.08994 * 109.47213 * 175.56653 * 1 2 3 21 21 H 1.08999 * 109.47716 * 295.56720 * 1 2 3 22 22 H 0.97006 * 119.99870 * 180.02562 * 7 6 4 23 23 H 1.08998 * 109.39050 * 302.98301 * 14 12 2 24 24 H 1.08999 * 109.39043 * 62.68602 * 14 12 2 25 25 H 1.08999 * 109.21182 * 169.13491 * 15 14 12 26 26 H 1.08997 * 109.09778 * 49.82156 * 15 14 12 27 27 H 1.08999 * 109.39148 * 310.48322 * 16 15 14 28 28 H 1.08996 * 109.31342 * 190.72372 * 16 15 14 29 29 H 1.09007 * 109.57878 * 177.17269 * 17 16 15 30 30 H 1.08999 * 109.68675 * 56.84597 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1350 -1.7855 -1.2292 6 6 2.3608 0.0122 -2.3578 7 7 2.7079 -0.6130 -3.4616 8 14 2.3129 1.8792 -2.3175 9 1 3.5963 2.3957 -1.7778 10 1 2.1096 2.3989 -3.6935 11 1 1.1947 2.3269 -1.4489 12 6 2.0399 -0.7213 1.2492 13 1 3.1300 -0.7219 1.2513 14 6 1.5256 -0.0052 2.5009 15 6 2.0835 -0.6772 3.7518 16 6 1.4522 -2.0510 3.9574 17 6 1.9602 -3.0244 2.8906 18 16 1.4294 -2.4331 1.2560 19 1 -0.3633 0.5811 -0.8477 20 1 -0.3633 -1.0245 -0.0794 21 1 -0.3634 0.4435 0.9270 22 1 2.9395 -0.1046 -4.2546 23 1 1.8416 1.0377 2.4767 24 1 0.4369 -0.0515 2.5227 25 1 1.8725 -0.0518 4.6192 26 1 3.1622 -0.7904 3.6448 27 1 0.3681 -1.9659 3.8828 28 1 1.7186 -2.4259 4.9456 29 1 1.5447 -4.0156 3.0729 30 1 3.0485 -3.0726 2.9258 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260498827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -27.416876 kcal Electronic energy + Delta-G solvation = -11405.168329 eV Core-core repulsion = 9518.519684 eV Total energy + Delta-G solvation = -1886.648645 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.00983 -34.49327 -31.82707 -29.36022 -26.25948 -25.25449 -22.67715 -20.40434 -19.35618 -16.93568 -15.98413 -14.77217 -14.48141 -14.10868 -13.48624 -13.23964 -12.66736 -12.56014 -12.22901 -11.83139 -11.27801 -11.23464 -10.99668 -10.63251 -10.60370 -10.36277 -10.19342 -9.65667 -9.32781 -9.18550 -8.70464 -8.41835 -6.79569 -6.00297 -3.99384 2.49508 3.30034 3.35972 3.39794 3.41002 4.46018 4.94386 5.03789 5.18318 5.31816 5.45744 5.60542 5.75667 5.87896 5.99322 6.05878 6.16355 6.28876 6.32354 6.34847 6.49304 6.61804 6.82596 6.92090 7.20322 7.50714 7.79868 8.59410 9.11425 9.61578 11.12366 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.051565 B = 0.011729 C = 0.010585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.871464 B = 2386.715092 C = 2644.597850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.025 3.975 3 H 0.039 0.961 4 C -0.509 4.509 5 H 0.088 0.912 6 C 0.071 3.929 7 N -0.900 5.900 8 Si 0.872 3.128 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.265 1.265 12 C -0.026 4.026 13 H 0.077 0.923 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.108 4.108 18 S -0.228 6.228 19 H 0.039 0.961 20 H 0.057 0.943 21 H 0.025 0.975 22 H 0.262 0.738 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 0.387 13.284 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.006 3.994 3 H 0.057 0.943 4 C -0.547 4.547 5 H 0.106 0.894 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.190 1.190 12 C -0.155 4.155 13 H 0.096 0.904 14 C -0.163 4.163 15 C -0.165 4.165 16 C -0.155 4.155 17 C -0.256 4.256 18 S -0.001 6.001 19 H 0.059 0.941 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.517 -0.167 12.280 12.536 hybrid contribution 0.802 1.660 0.785 2.004 sum -1.715 1.492 13.065 13.261 Atomic orbital electron populations 1.22084 0.98371 1.01135 0.98198 1.19066 0.93031 0.95295 0.92053 0.94346 1.21127 1.42744 0.96114 0.94688 0.89430 1.25056 0.94801 0.97822 0.95375 1.69912 1.46688 1.35554 1.01662 0.86942 0.78907 0.87108 0.77112 1.20341 1.21630 1.19002 1.23407 1.01697 0.92160 0.98257 0.90447 1.21951 1.01725 0.99260 0.93392 1.21532 1.00445 0.96203 0.98355 1.21666 1.01205 0.94892 0.97751 1.23495 1.03320 1.01483 0.97328 1.87232 1.77124 1.16775 1.18948 0.94143 0.92440 0.95579 0.92792 0.91588 0.90695 0.92035 0.92193 0.91039 0.92093 0.88932 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.61 37.16 0.32 -2.71 16 2 C 0.03 0.59 1.81 -91.78 -0.17 0.42 16 3 H 0.04 0.90 5.30 -51.93 -0.28 0.63 16 4 C -0.51 -14.22 8.49 -34.44 -0.29 -14.51 16 5 H 0.09 2.69 7.11 -52.49 -0.37 2.32 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.87 21.52 26.98 -169.99 -4.59 16.93 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -6.25 6.83 56.52 0.39 -5.86 16 12 C -0.03 -0.53 2.34 -26.68 -0.06 -0.59 16 13 H 0.08 1.61 8.14 -51.92 -0.42 1.18 16 14 C -0.12 -2.00 4.62 -26.91 -0.12 -2.12 16 15 C -0.13 -1.71 5.61 -27.17 -0.15 -1.86 16 16 C -0.12 -1.49 5.75 -26.90 -0.15 -1.65 16 17 C -0.11 -1.59 6.45 37.21 0.24 -1.35 16 18 S -0.23 -4.48 18.99 -107.50 -2.04 -6.53 16 19 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 20 H 0.06 1.27 7.09 -51.93 -0.37 0.90 16 21 H 0.03 0.48 6.26 -51.93 -0.33 0.16 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.07 1.20 6.40 -51.93 -0.33 0.87 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 243.74 15.07 3.67 3.67 Total: -1.00 -29.74 243.74 -7.29 -37.03 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.62 Total: -1.71 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -0.49 Total: -22.42 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.59 Total: 16.93 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -2.04 Total: -6.53 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.74 -7.29 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.613 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds