Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47203 * 2 1 4 4 C 1.50692 * 109.47098 * 240.00032 * 2 1 3 5 5 H 1.07998 * 120.00462 * 275.02989 * 4 2 1 6 6 C 1.37879 * 120.00065 * 95.03179 * 4 2 1 7 7 N 1.31516 * 120.00007 * 184.84109 * 6 4 2 8 8 Si 1.86802 * 120.00076 * 4.84020 * 6 4 2 9 9 H 1.48499 * 109.47085 * 84.68613 * 8 6 4 10 10 H 1.48490 * 109.47126 * 204.68792 * 8 6 4 11 11 H 1.48501 * 109.46630 * 324.68890 * 8 6 4 12 12 C 1.52999 * 109.46816 * 120.00100 * 2 1 3 13 13 H 1.09006 * 109.57613 * 180.02562 * 12 2 1 14 14 C 1.53097 * 109.57812 * 300.25640 * 12 2 1 15 15 C 1.52559 * 109.96805 * 182.70298 * 14 12 2 16 16 C 1.52581 * 110.84233 * 289.51709 * 15 14 12 17 17 C 1.53096 * 109.95594 * 70.62727 * 16 15 14 18 18 S 1.81741 * 109.57812 * 59.74281 * 12 2 1 19 19 H 1.09006 * 109.46928 * 55.56669 * 1 2 3 20 20 H 1.08994 * 109.47213 * 175.56653 * 1 2 3 21 21 H 1.08999 * 109.47716 * 295.56720 * 1 2 3 22 22 H 0.97006 * 119.99870 * 180.02562 * 7 6 4 23 23 H 1.08998 * 109.39050 * 302.98301 * 14 12 2 24 24 H 1.08999 * 109.39043 * 62.68602 * 14 12 2 25 25 H 1.08999 * 109.21182 * 169.13491 * 15 14 12 26 26 H 1.08997 * 109.09778 * 49.82156 * 15 14 12 27 27 H 1.08999 * 109.39148 * 310.48322 * 16 15 14 28 28 H 1.08996 * 109.31342 * 190.72372 * 16 15 14 29 29 H 1.09007 * 109.57878 * 177.17269 * 17 16 15 30 30 H 1.08999 * 109.68675 * 56.84597 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1350 -1.7855 -1.2292 6 6 2.3608 0.0122 -2.3578 7 7 2.7079 -0.6130 -3.4616 8 14 2.3129 1.8792 -2.3175 9 1 3.5963 2.3957 -1.7778 10 1 2.1096 2.3989 -3.6935 11 1 1.1947 2.3269 -1.4489 12 6 2.0399 -0.7213 1.2492 13 1 3.1300 -0.7219 1.2513 14 6 1.5256 -0.0052 2.5009 15 6 2.0835 -0.6772 3.7518 16 6 1.4522 -2.0510 3.9574 17 6 1.9602 -3.0244 2.8906 18 16 1.4294 -2.4331 1.2560 19 1 -0.3633 0.5811 -0.8477 20 1 -0.3633 -1.0245 -0.0794 21 1 -0.3634 0.4435 0.9270 22 1 2.9395 -0.1046 -4.2546 23 1 1.8416 1.0377 2.4767 24 1 0.4369 -0.0515 2.5227 25 1 1.8725 -0.0518 4.6192 26 1 3.1622 -0.7904 3.6448 27 1 0.3681 -1.9659 3.8828 28 1 1.7186 -2.4259 4.9456 29 1 1.5447 -4.0156 3.0729 30 1 3.0485 -3.0726 2.9258 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260498827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -44.982018 kcal Electronic energy + Delta-G solvation = -11405.930011 eV Core-core repulsion = 9518.519684 eV Total energy + Delta-G solvation = -1887.410326 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -38.39898 -36.07808 -33.84599 -30.77934 -27.65943 -27.23781 -24.11707 -21.59107 -21.09103 -19.01845 -17.43172 -16.51383 -15.87443 -15.70047 -14.81088 -14.57595 -14.49487 -14.25977 -13.76765 -13.24983 -12.91963 -12.67598 -12.61592 -12.35334 -11.98393 -11.79170 -11.75794 -11.47252 -11.02232 -10.89428 -10.71407 -10.16435 -8.38638 -8.18885 -6.25000 1.07325 1.35014 1.37146 1.47390 1.96301 2.38495 3.12461 3.84100 3.95063 4.05098 4.20729 4.38634 4.43491 4.58438 4.67063 4.78616 4.85231 4.98934 5.05266 5.10604 5.15857 5.20080 5.22588 5.37216 5.46060 5.71283 5.76881 6.41142 6.85909 7.39174 8.94747 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.051565 B = 0.011729 C = 0.010585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.871464 B = 2386.715092 C = 2644.597850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.021 3.979 3 H 0.043 0.957 4 C -0.507 4.507 5 H 0.044 0.956 6 C 0.006 3.994 7 N -0.954 5.954 8 Si 0.939 3.061 9 H -0.266 1.266 10 H -0.292 1.292 11 H -0.242 1.242 12 C -0.017 4.017 13 H 0.060 0.940 14 C -0.119 4.119 15 C -0.125 4.125 16 C -0.112 4.112 17 C -0.088 4.088 18 S -0.305 6.305 19 H 0.029 0.971 20 H 0.043 0.957 21 H 0.061 0.939 22 H 0.262 0.738 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 1.898 16.238 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.545 4.545 5 H 0.063 0.937 6 C -0.190 4.190 7 N -0.595 5.595 8 Si 0.763 3.237 9 H -0.192 1.192 10 H -0.219 1.219 11 H -0.166 1.166 12 C -0.146 4.146 13 H 0.078 0.922 14 C -0.158 4.158 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.236 4.236 18 S -0.078 6.078 19 H 0.048 0.952 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.999 1.346 15.265 15.615 hybrid contribution 0.969 1.030 -0.091 1.417 sum -2.030 2.376 15.174 15.492 Atomic orbital electron populations 1.21938 0.96903 1.00542 0.99578 1.19060 0.94121 0.95180 0.91537 0.93927 1.21397 1.41757 0.94637 0.96757 0.93747 1.25972 0.94798 1.03376 0.94859 1.70084 1.49052 1.37728 1.02658 0.85856 0.80030 0.80456 0.77361 1.19158 1.21866 1.16581 1.23203 1.00527 0.91981 0.98864 0.92165 1.21910 1.01827 0.99534 0.92501 1.21528 1.00117 0.96740 0.97838 1.21666 1.01101 0.94046 0.98281 1.23570 1.03502 1.02659 0.93894 1.87440 1.77600 1.18210 1.24554 0.95158 0.93764 0.92026 0.92881 0.90469 0.90419 0.89071 0.92430 0.91009 0.88771 0.87292 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.53 8.61 71.98 0.62 -4.92 16 2 C 0.02 0.94 1.81 -11.54 -0.02 0.92 16 3 H 0.04 1.91 5.30 -2.39 -0.01 1.90 16 4 C -0.51 -29.18 8.49 25.60 0.22 -28.96 16 5 H 0.04 2.89 7.11 -2.91 -0.02 2.87 16 6 C 0.01 0.34 5.47 84.65 0.46 0.80 16 7 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 8 Si 0.94 44.41 26.98 68.60 1.85 46.26 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.24 -10.47 6.83 99.48 0.68 -9.79 16 12 C -0.02 -0.66 2.34 30.63 0.07 -0.59 16 13 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 14 C -0.12 -3.43 4.62 30.48 0.14 -3.29 16 15 C -0.12 -2.82 5.61 30.31 0.17 -2.65 16 16 C -0.11 -2.41 5.75 30.49 0.18 -2.24 16 17 C -0.09 -2.39 6.45 72.01 0.46 -1.93 16 18 S -0.30 -11.99 18.99 -56.49 -1.07 -13.06 16 19 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 20 H 0.04 1.95 7.09 -2.39 -0.02 1.94 16 21 H 0.06 2.13 6.26 -2.39 -0.01 2.11 16 22 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.08 2.21 6.40 -2.39 -0.02 2.20 16 25 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 27 H 0.07 1.59 8.06 -2.39 -0.02 1.57 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -66.83 243.74 4.45 -62.38 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.07 Total: 8.11 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 2.30 Total: -42.84 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.30 Total: -60.85 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.85 Total: 46.26 kcal Atomic # 16 Polarization: -11.99 SS G_CDS: -1.07 Total: -13.06 kcal Total: -66.83 4.45 -62.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.398 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds