Wall clock time and date at job start Mon Mar 30 2020 03:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 H 1.09001 * 108.84610 * 62.87865 * 13 2 1 15 15 C 1.52940 * 108.89221 * 304.43591 * 13 2 1 16 16 C 1.55145 * 108.96242 * 209.10538 * 15 13 2 17 17 S 1.83983 * 100.91086 * 41.43951 * 16 15 13 18 18 C 1.53715 * 108.88772 * 181.45260 * 13 2 1 19 19 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 20 20 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 22 22 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 23 23 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 24 24 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.60153 * 329.03862 * 15 13 2 26 26 H 1.09005 * 109.59927 * 89.16984 * 15 13 2 27 27 H 1.08997 * 111.12907 * 283.52216 * 16 15 13 28 28 H 1.09002 * 111.16906 * 159.36687 * 16 15 13 29 29 H 1.09001 * 110.33926 * 242.49294 * 18 13 2 30 30 H 1.08995 * 110.34062 * 4.64475 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 1.6545 0.2833 -4.7988 9 14 2.9681 -1.9854 -3.9026 10 1 2.0289 -3.1290 -4.0260 11 1 3.8217 -1.9127 -5.1157 12 1 3.8252 -2.1758 -2.7049 13 6 2.0400 -0.7212 1.2492 14 1 1.7140 -1.7607 1.2134 15 6 1.4336 -0.0575 2.4865 16 6 2.4143 -0.2202 3.6776 17 16 4.0249 0.1044 2.8494 18 6 3.5766 -0.6815 1.2542 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6054 -1.7197 -1.2952 23 1 3.1263 -0.7993 -1.2057 24 1 1.9049 -0.0377 -5.6792 25 1 1.2697 1.0020 2.2898 26 1 0.4830 -0.5332 2.7277 27 1 2.3771 -1.2317 4.0818 28 1 2.2161 0.5183 4.4544 29 1 3.9819 -1.6921 1.2025 30 1 3.9429 -0.0839 0.4195 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260638135.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:17 Heat of formation + Delta-G solvation = -45.464085 kcal Electronic energy + Delta-G solvation = -11224.837167 eV Core-core repulsion = 9337.405937 eV Total energy + Delta-G solvation = -1887.431230 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.13892 -35.21975 -33.46155 -30.34782 -29.56685 -25.48075 -25.05538 -21.93010 -20.48529 -18.94504 -17.55450 -16.44267 -16.22595 -15.54260 -15.15955 -14.66961 -14.50276 -13.93501 -13.45567 -13.16437 -13.05977 -12.83975 -12.67133 -12.49001 -12.10925 -11.85179 -11.61846 -11.42821 -11.12234 -11.02202 -10.73972 -10.68172 -8.70305 -8.26799 -6.28736 0.97454 1.34448 1.36794 1.45100 1.47733 2.36530 3.08790 3.65790 3.71543 4.00722 4.18831 4.32029 4.42178 4.53141 4.62367 4.66690 4.80257 4.90498 4.92409 5.06939 5.14359 5.25891 5.34978 5.41767 5.55359 5.72039 5.73688 6.33435 6.79213 7.34747 8.90057 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048716 B = 0.009502 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.617326 B = 2946.099918 C = 3258.960637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 H 0.047 0.953 4 C -0.009 4.009 5 C -0.518 4.518 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.246 1.246 13 C -0.087 4.087 14 H 0.086 0.914 15 C -0.115 4.115 16 C -0.048 4.048 17 S -0.364 6.364 18 C -0.053 4.053 19 H 0.031 0.969 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.264 0.736 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -4.706 16.434 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 H 0.065 0.935 4 C -0.046 4.046 5 C -0.556 4.556 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.169 1.169 13 C -0.107 4.107 14 H 0.104 0.896 15 C -0.153 4.153 16 C -0.196 4.196 17 S -0.138 6.138 18 C -0.201 4.201 19 H 0.050 0.950 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.394 -4.160 16.646 17.215 hybrid contribution -0.515 -0.791 -1.412 1.698 sum 0.880 -4.951 15.234 16.043 Atomic orbital electron populations 1.21723 0.94780 1.01513 1.00835 1.21025 0.96264 0.98144 0.92968 0.93477 1.19676 0.96098 0.95670 0.93174 1.21495 1.34120 1.08688 0.91343 0.94807 1.26004 0.97050 1.00906 0.95605 1.70075 1.49197 1.41590 0.98740 0.85728 0.79398 0.79680 0.78291 1.19197 1.21448 1.16896 1.21721 0.91880 1.01424 0.95634 0.89593 1.22453 0.99477 1.02284 0.91119 1.24447 0.89239 1.06303 0.99567 1.87853 1.28690 1.79753 1.17547 1.24078 0.98480 1.02847 0.94709 0.94984 0.92674 0.91159 0.96390 0.96327 0.92747 0.90933 0.87770 0.87601 0.86077 0.88843 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.68 71.98 0.62 -3.81 16 2 C -0.06 -2.36 1.54 -10.80 -0.02 -2.37 16 3 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 4 C -0.01 -0.40 3.34 29.85 0.10 -0.30 16 5 C -0.52 -29.48 8.96 25.60 0.23 -29.25 16 6 H 0.03 2.12 7.30 -2.91 -0.02 2.10 16 7 C 0.00 0.02 5.47 84.66 0.46 0.48 16 8 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 9 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 13 C -0.09 -2.41 2.29 -10.57 -0.02 -2.44 16 14 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.11 -2.45 4.48 31.31 0.14 -2.31 16 16 C -0.05 -0.92 7.52 72.72 0.55 -0.38 16 17 S -0.36 -10.17 23.23 -56.49 -1.31 -11.48 16 18 C -0.05 -1.58 6.24 72.22 0.45 -1.13 16 19 H 0.03 1.29 6.95 -2.39 -0.02 1.27 16 20 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.07 1.88 6.82 -2.39 -0.02 1.86 16 22 H 0.02 0.78 7.58 -2.38 -0.02 0.77 16 23 H 0.02 0.83 5.52 -2.39 -0.01 0.82 16 24 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.07 1.69 7.57 -2.39 -0.02 1.67 16 26 H 0.10 1.75 8.04 -2.38 -0.02 1.73 16 27 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 2.90 6.59 -2.39 -0.02 2.88 16 Total: -1.00 -65.49 247.45 4.42 -61.07 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.04 Total: 5.79 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 2.51 Total: -41.51 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.30 Total: -60.11 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Atomic # 16 Polarization: -10.17 SS G_CDS: -1.31 Total: -11.48 kcal Total: -65.49 4.42 -61.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638135.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.603 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds