Wall clock time and date at job start Mon Mar 30 2020 03:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 109.47624 * 2 1 4 4 H 1.08998 * 109.47357 * 180.70708 * 3 2 1 5 5 C 1.53005 * 109.47286 * 60.70755 * 3 2 1 6 6 C 1.50698 * 109.46758 * 64.99894 * 5 3 2 7 7 H 1.08003 * 120.00331 * 0.02562 * 6 5 3 8 8 C 1.37881 * 119.99874 * 180.02562 * 6 5 3 9 9 N 1.31507 * 120.00263 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99876 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47015 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.47148 * 60.00102 * 10 8 6 13 13 H 1.48498 * 109.47147 * 300.00310 * 10 8 6 14 14 C 1.52999 * 109.47335 * 300.71130 * 3 2 1 15 15 H 1.08996 * 113.40816 * 52.11709 * 14 3 2 16 16 C 1.55887 * 114.37966 * 278.43655 * 14 3 2 17 17 C 1.55886 * 102.95074 * 222.40308 * 16 14 3 18 18 S 1.83084 * 82.43893 * 24.20337 * 17 16 14 19 19 H 1.08996 * 109.47548 * 180.52665 * 1 2 3 20 20 H 1.09001 * 109.46552 * 300.52497 * 1 2 3 21 21 H 1.09004 * 109.46900 * 60.51839 * 1 2 3 22 22 H 1.09007 * 109.46560 * 239.99663 * 2 1 3 23 23 H 1.09004 * 109.46913 * 120.00344 * 2 1 3 24 24 H 1.08998 * 109.47221 * 305.00698 * 5 3 2 25 25 H 1.09000 * 109.47430 * 184.99861 * 5 3 2 26 26 H 0.97007 * 119.99407 * 359.97438 * 9 8 6 27 27 H 1.09002 * 110.82092 * 340.93370 * 16 14 3 28 28 H 1.08997 * 110.82439 * 103.86260 * 16 14 3 29 29 H 1.08999 * 114.37806 * 270.80922 * 17 16 14 30 30 H 1.08995 * 114.41644 * 137.59578 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 1 3.1300 1.4423 -0.0127 5 6 1.5448 2.1585 1.2581 6 6 2.1599 1.5181 2.4757 7 1 2.8367 0.6840 2.3634 8 6 1.8585 1.9970 3.7330 9 7 1.0340 3.0123 3.8698 10 14 2.6216 1.2036 5.2423 11 1 2.1398 1.8978 6.4634 12 1 4.1007 1.3096 5.1629 13 1 2.2304 -0.2278 5.3002 14 6 1.5157 2.1688 -1.2402 15 1 0.4356 2.0897 -1.3640 16 6 2.3346 1.8984 -2.5388 17 6 2.4319 3.3110 -3.1909 18 16 2.1800 3.8604 -1.4627 19 1 -0.3634 -1.0275 0.0094 20 1 -0.3632 0.5220 0.8853 21 1 -0.3633 0.5058 -0.8946 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.4591 2.0814 1.3164 25 1 1.8327 3.2090 1.2154 26 1 0.6381 3.4245 3.0860 27 1 3.3257 1.5135 -2.2987 28 1 1.8059 1.2052 -3.1929 29 1 1.6098 3.5532 -3.8644 30 1 3.4127 3.5513 -3.6010 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:26 Heat of formation + Delta-G solvation = -9.894931 kcal Electronic energy + Delta-G solvation = -11241.774032 eV Core-core repulsion = 9355.885196 eV Total energy + Delta-G solvation = -1885.888836 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -37.25410 -33.98446 -32.38637 -28.87028 -26.52725 -23.88927 -22.96213 -21.28405 -18.81460 -16.80269 -16.39346 -14.91483 -14.31778 -13.79229 -13.57807 -13.04418 -13.02367 -12.74958 -12.03634 -11.75570 -11.39564 -11.22677 -11.09565 -10.76559 -10.54271 -10.09949 -10.07377 -9.89064 -9.48456 -8.81934 -8.46214 -8.25630 -7.35200 -6.29326 -3.97555 2.00227 2.52518 3.46300 3.48631 3.66987 4.57394 4.68713 4.74576 5.00438 5.39591 5.47459 5.53703 5.65820 5.72761 5.78392 5.82781 5.93143 6.18759 6.36126 6.47721 6.66988 6.77096 6.93651 7.05661 7.49348 7.59194 8.26797 8.52408 8.94608 9.73627 11.10938 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.043943 B = 0.010033 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.033721 B = 2790.009901 C = 3112.310905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.055 4.055 4 H 0.068 0.932 5 C 0.015 3.985 6 C -0.593 4.593 7 H 0.049 0.951 8 C 0.014 3.986 9 N -0.914 5.914 10 Si 1.066 2.934 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.289 1.289 14 C -0.022 4.022 15 H 0.108 0.892 16 C -0.142 4.142 17 C -0.087 4.087 18 S -0.314 6.314 19 H 0.042 0.958 20 H 0.068 0.932 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.013 0.987 25 H 0.011 0.989 26 H 0.268 0.732 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -4.053 -12.088 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.075 4.075 4 H 0.087 0.913 5 C -0.022 4.022 6 C -0.632 4.632 7 H 0.067 0.933 8 C -0.190 4.190 9 N -0.550 5.550 10 Si 0.895 3.105 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.215 1.215 14 C -0.150 4.150 15 H 0.126 0.874 16 C -0.180 4.180 17 C -0.236 4.236 18 S -0.087 6.087 19 H 0.061 0.939 20 H 0.087 0.913 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.324 -2.826 -9.711 10.200 hybrid contribution -0.260 -0.909 -2.379 2.560 sum 1.064 -3.734 -12.090 12.698 Atomic orbital electron populations 1.21846 0.96707 1.00432 1.01858 1.21382 0.95664 0.96132 1.00922 1.21073 0.99648 0.94217 0.92532 0.91335 1.19302 0.96131 0.95254 0.91543 1.21968 1.30407 1.18546 0.92244 0.93283 1.25786 0.96057 0.95992 1.01147 1.70768 1.28633 1.21737 1.33865 0.83587 0.75750 0.75412 0.75790 1.20857 1.21519 1.21527 1.24769 1.01497 0.90731 0.97996 0.87416 1.23625 1.02313 0.96715 0.95392 1.24546 1.05052 0.98141 0.95828 1.88827 1.83120 1.26652 1.10118 0.93890 0.91299 0.93894 0.94052 0.90613 0.96937 0.97102 0.92119 0.89001 0.91184 0.88437 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.27 37.16 0.34 -2.23 16 2 C -0.10 -1.83 5.53 -26.73 -0.15 -1.98 16 3 C -0.05 -1.11 1.90 -90.62 -0.17 -1.28 16 4 H 0.07 1.45 7.94 -51.93 -0.41 1.04 16 5 C 0.01 0.38 3.50 -27.88 -0.10 0.28 16 6 C -0.59 -16.73 8.40 -34.44 -0.29 -17.02 16 7 H 0.05 1.35 7.06 -52.48 -0.37 0.98 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 9 N -0.91 -28.51 13.65 55.43 0.76 -27.75 16 10 Si 1.07 25.64 29.90 -169.99 -5.08 20.56 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 C -0.02 -0.37 3.47 -25.19 -0.09 -0.46 16 15 H 0.11 1.80 6.33 -51.93 -0.33 1.47 16 16 C -0.14 -1.92 6.54 -23.65 -0.15 -2.08 16 17 C -0.09 -1.12 9.09 38.70 0.35 -0.76 16 18 S -0.31 -5.78 22.88 -107.50 -2.46 -8.24 16 19 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.07 1.37 6.31 -51.93 -0.33 1.05 16 21 H 0.04 0.65 6.33 -51.93 -0.33 0.32 16 22 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.08 1.51 6.93 -51.93 -0.36 1.15 16 24 H 0.01 0.33 6.05 -51.93 -0.31 0.02 16 25 H 0.01 0.31 7.25 -51.93 -0.38 -0.07 16 26 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16 27 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 250.91 15.07 3.78 3.78 Total: -1.00 -30.88 250.91 -7.79 -38.67 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.43 Total: -1.77 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -0.35 Total: -25.23 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.76 Total: -27.75 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -2.46 Total: -8.24 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.88 -7.79 -38.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.770 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds