Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 109.47624 * 2 1 4 4 H 1.08998 * 109.47357 * 180.70708 * 3 2 1 5 5 C 1.53005 * 109.47286 * 60.70755 * 3 2 1 6 6 C 1.50698 * 109.46758 * 64.99894 * 5 3 2 7 7 H 1.08003 * 120.00331 * 0.02562 * 6 5 3 8 8 C 1.37881 * 119.99874 * 180.02562 * 6 5 3 9 9 N 1.31507 * 120.00263 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99876 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47015 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.47148 * 60.00102 * 10 8 6 13 13 H 1.48498 * 109.47147 * 300.00310 * 10 8 6 14 14 C 1.52999 * 109.47335 * 300.71130 * 3 2 1 15 15 H 1.08996 * 113.40816 * 52.11709 * 14 3 2 16 16 C 1.55887 * 114.37966 * 278.43655 * 14 3 2 17 17 C 1.55886 * 102.95074 * 222.40308 * 16 14 3 18 18 S 1.83084 * 82.43893 * 24.20337 * 17 16 14 19 19 H 1.08996 * 109.47548 * 180.52665 * 1 2 3 20 20 H 1.09001 * 109.46552 * 300.52497 * 1 2 3 21 21 H 1.09004 * 109.46900 * 60.51839 * 1 2 3 22 22 H 1.09007 * 109.46560 * 239.99663 * 2 1 3 23 23 H 1.09004 * 109.46913 * 120.00344 * 2 1 3 24 24 H 1.08998 * 109.47221 * 305.00698 * 5 3 2 25 25 H 1.09000 * 109.47430 * 184.99861 * 5 3 2 26 26 H 0.97007 * 119.99407 * 359.97438 * 9 8 6 27 27 H 1.09002 * 110.82092 * 340.93370 * 16 14 3 28 28 H 1.08997 * 110.82439 * 103.86260 * 16 14 3 29 29 H 1.08999 * 114.37806 * 270.80922 * 17 16 14 30 30 H 1.08995 * 114.41644 * 137.59578 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 1 3.1300 1.4423 -0.0127 5 6 1.5448 2.1585 1.2581 6 6 2.1599 1.5181 2.4757 7 1 2.8367 0.6840 2.3634 8 6 1.8585 1.9970 3.7330 9 7 1.0340 3.0123 3.8698 10 14 2.6216 1.2036 5.2423 11 1 2.1398 1.8978 6.4634 12 1 4.1007 1.3096 5.1629 13 1 2.2304 -0.2278 5.3002 14 6 1.5157 2.1688 -1.2402 15 1 0.4356 2.0897 -1.3640 16 6 2.3346 1.8984 -2.5388 17 6 2.4319 3.3110 -3.1909 18 16 2.1800 3.8604 -1.4627 19 1 -0.3634 -1.0275 0.0094 20 1 -0.3632 0.5220 0.8853 21 1 -0.3633 0.5058 -0.8946 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.4591 2.0814 1.3164 25 1 1.8327 3.2090 1.2154 26 1 0.6381 3.4245 3.0860 27 1 3.3257 1.5135 -2.2987 28 1 1.8059 1.2052 -3.1929 29 1 1.6098 3.5532 -3.8644 30 1 3.4127 3.5513 -3.6010 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = -28.086758 kcal Electronic energy + Delta-G solvation = -11242.562889 eV Core-core repulsion = 9355.885196 eV Total energy + Delta-G solvation = -1886.677693 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.79946 -35.58160 -34.21705 -30.52439 -28.21632 -25.47463 -24.84026 -22.58427 -20.40452 -18.70545 -17.99060 -16.39262 -15.80256 -15.65373 -15.09232 -14.73710 -14.48710 -13.99546 -13.59963 -13.20252 -13.11310 -12.98228 -12.51393 -12.37844 -12.16925 -11.95380 -11.60211 -11.50691 -11.19949 -10.60851 -10.50713 -10.11539 -8.80706 -8.65053 -6.33554 0.74388 1.30351 1.50220 1.59484 1.77757 2.57307 3.19633 3.51569 3.58261 3.87079 4.15361 4.22568 4.26674 4.39951 4.58884 4.61674 4.80491 4.88687 4.93465 4.97607 5.09221 5.12788 5.36267 5.47649 5.53473 5.64086 6.04481 6.22683 6.61199 7.47668 8.74806 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.043943 B = 0.010033 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.033721 B = 2790.009901 C = 3112.310905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.047 4.047 4 H 0.055 0.945 5 C 0.021 3.979 6 C -0.600 4.600 7 H 0.054 0.946 8 C -0.045 4.045 9 N -0.942 5.942 10 Si 1.115 2.885 11 H -0.287 1.287 12 H -0.271 1.271 13 H -0.265 1.265 14 C -0.011 4.011 15 H 0.113 0.887 16 C -0.129 4.129 17 C -0.042 4.042 18 S -0.435 6.435 19 H 0.067 0.933 20 H 0.027 0.973 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.051 0.949 24 H -0.006 1.006 25 H -0.026 1.026 26 H 0.251 0.749 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -6.138 -14.226 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.067 4.067 4 H 0.074 0.926 5 C -0.016 4.016 6 C -0.638 4.638 7 H 0.072 0.928 8 C -0.241 4.241 9 N -0.581 5.581 10 Si 0.936 3.064 11 H -0.212 1.212 12 H -0.196 1.196 13 H -0.190 1.190 14 C -0.139 4.139 15 H 0.131 0.869 16 C -0.167 4.167 17 C -0.190 4.190 18 S -0.210 6.210 19 H 0.086 0.914 20 H 0.046 0.954 21 H 0.083 0.917 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.012 0.988 25 H -0.008 1.008 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.142 0.858 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.965 -4.927 -11.884 13.014 hybrid contribution -0.470 -0.220 -1.796 1.870 sum 1.495 -5.147 -13.680 14.693 Atomic orbital electron populations 1.21792 0.95978 1.01700 1.00918 1.21346 0.96242 0.94282 1.01755 1.20862 0.98749 0.95583 0.91503 0.92644 1.19161 0.94829 0.93685 0.93933 1.22399 1.29773 1.18256 0.93336 0.92796 1.27401 0.95829 0.95781 1.05107 1.70916 1.30679 1.23525 1.32942 0.82979 0.75857 0.75660 0.71920 1.21241 1.19633 1.18961 1.24703 1.02191 0.88182 0.98865 0.86935 1.23432 1.01972 0.97848 0.93441 1.24805 1.07286 0.95559 0.91322 1.89313 1.83782 1.30165 1.17694 0.91413 0.95408 0.91729 0.89891 0.92988 0.98752 1.00762 0.94009 0.88807 0.87369 0.85783 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.27 71.98 0.67 -4.09 16 2 C -0.10 -3.32 5.53 30.59 0.17 -3.15 16 3 C -0.05 -1.90 1.90 -10.80 -0.02 -1.92 16 4 H 0.06 2.35 7.94 -2.39 -0.02 2.33 16 5 C 0.02 1.12 3.50 29.85 0.10 1.23 16 6 C -0.60 -34.71 8.40 25.60 0.21 -34.50 16 7 H 0.05 3.00 7.06 -2.91 -0.02 2.98 16 8 C -0.04 -2.68 5.46 84.66 0.46 -2.22 16 9 N -0.94 -61.22 13.65 21.45 0.29 -60.93 16 10 Si 1.11 51.83 29.90 68.60 2.05 53.88 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 14 C -0.01 -0.38 3.47 31.59 0.11 -0.27 16 15 H 0.11 3.58 6.33 -2.39 -0.02 3.57 16 16 C -0.13 -2.95 6.54 32.59 0.21 -2.74 16 17 C -0.04 -0.92 9.09 72.98 0.66 -0.26 16 18 S -0.44 -16.11 22.88 -56.49 -1.29 -17.40 16 19 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 20 H 0.03 1.11 6.31 -2.39 -0.02 1.09 16 21 H 0.06 1.79 6.33 -2.38 -0.02 1.78 16 22 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.05 2.01 6.93 -2.38 -0.02 2.00 16 24 H -0.01 -0.32 6.05 -2.39 -0.01 -0.34 16 25 H -0.03 -1.56 7.25 -2.39 -0.02 -1.58 16 26 H 0.25 16.73 7.22 -92.70 -0.67 16.06 16 27 H 0.09 2.17 7.87 -2.39 -0.02 2.15 16 28 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -71.40 250.91 4.84 -66.56 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.20 Total: 5.81 kcal Atomic # 6 Polarization: -50.51 SS G_CDS: 2.58 Total: -47.92 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.29 Total: -60.93 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.88 kcal Atomic # 16 Polarization: -16.11 SS G_CDS: -1.29 Total: -17.40 kcal Total: -71.40 4.84 -66.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.478 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds