Wall clock time and date at job start Mon Mar 30 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47108 * 2 1 4 4 H 1.09004 * 109.46633 * 305.98424 * 3 2 1 5 5 C 1.52995 * 109.47385 * 65.98176 * 3 2 1 6 6 C 1.50696 * 109.47356 * 185.51727 * 5 3 2 7 7 H 1.07999 * 120.00009 * 355.09050 * 6 5 3 8 8 C 1.37881 * 120.00144 * 175.09611 * 6 5 3 9 9 N 1.31511 * 119.99764 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99952 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46920 * 270.00325 * 10 8 6 12 12 H 1.48495 * 109.47247 * 150.00166 * 10 8 6 13 13 H 1.48504 * 109.47057 * 29.99849 * 10 8 6 14 14 C 1.52998 * 109.47132 * 185.98670 * 3 2 1 15 15 H 1.09002 * 112.48993 * 194.77578 * 14 3 2 16 16 C 1.53043 * 113.15193 * 64.99471 * 14 3 2 17 17 C 1.53037 * 89.86461 * 211.84542 * 16 14 3 18 18 S 1.81427 * 89.89171 * 32.89783 * 17 16 14 19 19 H 1.08998 * 109.47235 * 174.56261 * 1 2 3 20 20 H 1.08999 * 109.47699 * 294.56987 * 1 2 3 21 21 H 1.09004 * 109.47137 * 54.56886 * 1 2 3 22 22 H 1.09003 * 109.47335 * 239.99670 * 2 1 3 23 23 H 1.08997 * 109.47076 * 119.99459 * 2 1 3 24 24 H 1.08996 * 109.47212 * 65.50944 * 5 3 2 25 25 H 1.09004 * 109.46963 * 305.51702 * 5 3 2 26 26 H 0.97006 * 119.99536 * 179.97438 * 9 8 6 27 27 H 1.09003 * 113.15160 * 327.10366 * 16 14 3 28 28 H 1.08999 * 113.14858 * 96.55080 * 16 14 3 29 29 H 1.09007 * 113.14384 * 148.15197 * 17 16 14 30 30 H 1.08997 * 113.15372 * 277.63316 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5917 1.9863 -0.8316 5 6 1.6564 2.1191 1.3175 6 6 2.0382 3.5760 1.2639 7 1 2.5783 3.9617 0.4119 8 6 1.6981 4.4165 2.3027 9 7 2.0318 5.6877 2.2561 10 14 0.7635 3.7495 3.7761 11 1 -0.6964 3.8675 3.5311 12 1 1.1269 4.5287 4.9869 13 1 1.1171 2.3219 3.9817 14 6 3.5625 1.4452 -0.1504 15 1 4.0044 2.4102 0.0979 16 6 4.0349 0.8961 -1.4986 17 6 5.3015 0.3561 -0.8308 18 16 4.3649 0.0539 0.6934 19 1 -0.3633 -1.0230 -0.0974 20 1 -0.3634 0.4273 0.9346 21 1 -0.3634 0.5958 -0.8374 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 2.1823 1.6357 2.1408 25 1 0.5810 2.0308 1.4717 26 1 1.7922 6.2791 2.9867 27 1 3.3892 0.1106 -1.8915 28 1 4.2360 1.6766 -2.2325 29 1 5.6734 -0.5582 -1.2935 30 1 6.0792 1.1107 -0.7134 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643314.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:33 Heat of formation + Delta-G solvation = -3.418337 kcal Electronic energy + Delta-G solvation = -11306.661231 eV Core-core repulsion = 9421.053241 eV Total energy + Delta-G solvation = -1885.607990 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.56572 -34.11620 -32.44013 -29.66656 -26.78640 -23.51685 -22.20995 -21.47066 -19.21527 -16.87792 -16.08018 -15.00825 -14.62811 -13.60853 -13.39831 -13.14446 -12.87018 -12.71134 -12.30877 -11.71536 -11.56978 -11.19580 -11.00314 -10.77036 -10.58365 -10.40842 -9.86059 -9.74998 -9.41533 -9.24833 -9.00273 -8.51613 -7.21650 -6.03624 -4.00638 2.27463 2.50539 3.31685 3.39760 3.45456 4.47202 4.75511 5.07080 5.29408 5.40225 5.47259 5.58202 5.62012 5.67699 5.88711 5.95057 6.22128 6.27354 6.28693 6.39256 6.62422 6.67412 6.84535 6.93418 7.26306 7.46261 7.81185 8.53324 8.99990 9.60118 11.09607 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.012020 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.034467 B = 2328.827289 C = 2657.040426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.065 4.065 4 H 0.077 0.923 5 C -0.009 4.009 6 C -0.517 4.517 7 H 0.073 0.927 8 C 0.068 3.932 9 N -0.904 5.904 10 Si 0.875 3.125 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 C -0.022 4.022 15 H 0.122 0.878 16 C -0.128 4.128 17 C -0.088 4.088 18 S -0.310 6.310 19 H 0.043 0.957 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.014 0.986 25 H 0.018 0.982 26 H 0.262 0.738 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 -10.431 -6.615 12.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.084 4.084 4 H 0.095 0.905 5 C -0.047 4.047 6 C -0.555 4.555 7 H 0.091 0.909 8 C -0.133 4.133 9 N -0.543 5.543 10 Si 0.703 3.297 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.190 1.190 14 C -0.150 4.150 15 H 0.140 0.860 16 C -0.167 4.167 17 C -0.237 4.237 18 S -0.085 6.085 19 H 0.062 0.938 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.889 -11.110 -5.324 12.463 hybrid contribution -0.357 0.567 0.081 0.675 sum 1.532 -10.542 -5.244 11.874 Atomic orbital electron populations 1.21815 0.96606 1.00248 1.02119 1.21702 0.94951 0.97140 1.01675 1.21072 0.91148 0.95002 1.01178 0.90520 1.19647 0.96244 0.96407 0.92378 1.21129 1.36774 0.91612 1.05996 0.90924 1.24995 0.95553 0.94680 0.98076 1.69910 1.47409 1.04107 1.32849 0.86837 0.80452 0.79661 0.82752 1.20338 1.21433 1.19035 1.24400 1.00129 0.98097 0.92388 0.85979 1.23001 0.94972 1.01096 0.97615 1.24071 1.00483 1.03836 0.95294 1.88805 1.38480 1.45247 1.35928 0.93771 0.92496 0.92996 0.92626 0.91705 0.96772 0.96342 0.92811 0.88562 0.89780 0.89476 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.56 37.15 0.36 -1.98 16 2 C -0.12 -1.95 4.43 -26.73 -0.12 -2.06 16 3 C -0.06 -1.24 1.82 -90.62 -0.16 -1.41 16 4 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 5 C -0.01 -0.23 3.40 -27.89 -0.09 -0.32 16 6 C -0.52 -14.40 8.90 -34.44 -0.31 -14.71 16 7 H 0.07 2.13 7.35 -52.49 -0.39 1.75 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 10 Si 0.88 22.14 27.37 -169.99 -4.65 17.49 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.27 -6.60 6.69 56.52 0.38 -6.23 16 14 C -0.02 -0.40 3.27 -26.71 -0.09 -0.48 16 15 H 0.12 2.50 6.88 -51.93 -0.36 2.14 16 16 C -0.13 -1.74 7.06 -26.69 -0.19 -1.92 16 17 C -0.09 -1.18 7.98 37.18 0.30 -0.88 16 18 S -0.31 -5.47 22.26 -107.50 -2.39 -7.86 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 20 H 0.06 0.96 6.74 -51.93 -0.35 0.61 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.82 6.45 -51.93 -0.34 0.49 16 23 H 0.06 1.17 6.99 -51.93 -0.36 0.80 16 24 H 0.01 0.36 7.54 -51.93 -0.39 -0.04 16 25 H 0.02 0.44 5.64 -51.93 -0.29 0.15 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.10 1.21 6.50 -51.93 -0.34 0.87 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 247.61 15.07 3.73 3.73 Total: -1.00 -30.07 247.61 -7.45 -37.52 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.51 Total: -1.99 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -0.41 Total: -21.88 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.65 Total: 17.49 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -2.39 Total: -7.86 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.07 -7.45 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643314.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.103 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds