Wall clock time and date at job start Mon Mar 30 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47108 * 2 1 4 4 H 1.09004 * 109.46633 * 305.98424 * 3 2 1 5 5 C 1.52995 * 109.47385 * 65.98176 * 3 2 1 6 6 C 1.50696 * 109.47356 * 185.51727 * 5 3 2 7 7 H 1.07999 * 120.00009 * 355.09050 * 6 5 3 8 8 C 1.37881 * 120.00144 * 175.09611 * 6 5 3 9 9 N 1.31511 * 119.99764 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99952 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46920 * 270.00325 * 10 8 6 12 12 H 1.48495 * 109.47247 * 150.00166 * 10 8 6 13 13 H 1.48504 * 109.47057 * 29.99849 * 10 8 6 14 14 C 1.52998 * 109.47132 * 185.98670 * 3 2 1 15 15 H 1.09002 * 112.48993 * 194.77578 * 14 3 2 16 16 C 1.53043 * 113.15193 * 64.99471 * 14 3 2 17 17 C 1.53037 * 89.86461 * 211.84542 * 16 14 3 18 18 S 1.81427 * 89.89171 * 32.89783 * 17 16 14 19 19 H 1.08998 * 109.47235 * 174.56261 * 1 2 3 20 20 H 1.08999 * 109.47699 * 294.56987 * 1 2 3 21 21 H 1.09004 * 109.47137 * 54.56886 * 1 2 3 22 22 H 1.09003 * 109.47335 * 239.99670 * 2 1 3 23 23 H 1.08997 * 109.47076 * 119.99459 * 2 1 3 24 24 H 1.08996 * 109.47212 * 65.50944 * 5 3 2 25 25 H 1.09004 * 109.46963 * 305.51702 * 5 3 2 26 26 H 0.97006 * 119.99536 * 179.97438 * 9 8 6 27 27 H 1.09003 * 113.15160 * 327.10366 * 16 14 3 28 28 H 1.08999 * 113.14858 * 96.55080 * 16 14 3 29 29 H 1.09007 * 113.14384 * 148.15197 * 17 16 14 30 30 H 1.08997 * 113.15372 * 277.63316 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5917 1.9863 -0.8316 5 6 1.6564 2.1191 1.3175 6 6 2.0382 3.5760 1.2639 7 1 2.5783 3.9617 0.4119 8 6 1.6981 4.4165 2.3027 9 7 2.0318 5.6877 2.2561 10 14 0.7635 3.7495 3.7761 11 1 -0.6964 3.8675 3.5311 12 1 1.1269 4.5287 4.9869 13 1 1.1171 2.3219 3.9817 14 6 3.5625 1.4452 -0.1504 15 1 4.0044 2.4102 0.0979 16 6 4.0349 0.8961 -1.4986 17 6 5.3015 0.3561 -0.8308 18 16 4.3649 0.0539 0.6934 19 1 -0.3633 -1.0230 -0.0974 20 1 -0.3634 0.4273 0.9346 21 1 -0.3634 0.5958 -0.8374 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 2.1823 1.6357 2.1408 25 1 0.5810 2.0308 1.4717 26 1 1.7922 6.2791 2.9867 27 1 3.3892 0.1106 -1.8915 28 1 4.2360 1.6766 -2.2325 29 1 5.6734 -0.5582 -1.2935 30 1 6.0792 1.1107 -0.7134 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643314.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:33 Heat of formation + Delta-G solvation = -20.891954 kcal Electronic energy + Delta-G solvation = -11307.418944 eV Core-core repulsion = 9421.053241 eV Total energy + Delta-G solvation = -1886.365703 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98918 -35.57926 -34.43787 -31.36618 -28.40754 -25.04190 -23.76160 -22.80283 -20.78556 -18.98943 -17.43758 -16.55489 -16.31436 -15.29180 -14.95511 -14.54562 -14.42282 -14.07069 -13.93405 -13.42939 -13.00835 -12.64886 -12.59867 -12.24242 -12.17743 -11.92958 -11.68055 -11.42968 -11.14946 -10.86228 -10.72536 -10.55882 -8.60985 -8.29346 -6.29954 1.09196 1.14539 1.29383 1.32601 1.43799 2.33658 3.06409 3.57260 3.87001 4.11223 4.17734 4.28086 4.37807 4.64918 4.65595 4.77465 4.88796 4.92530 4.98164 5.04210 5.18213 5.24868 5.36955 5.39842 5.53178 5.66402 5.73043 6.29751 6.76427 7.33834 8.86826 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.012020 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.034467 B = 2328.827289 C = 2657.040426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.062 4.062 4 H 0.076 0.924 5 C -0.004 4.004 6 C -0.516 4.516 7 H 0.044 0.956 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.937 3.063 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.261 1.261 14 C -0.028 4.028 15 H 0.085 0.915 16 C -0.110 4.110 17 C -0.065 4.065 18 S -0.368 6.368 19 H 0.069 0.931 20 H 0.036 0.964 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.050 0.950 24 H -0.003 1.003 25 H 0.020 0.980 26 H 0.264 0.736 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -12.341 -7.708 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.081 4.081 4 H 0.094 0.906 5 C -0.041 4.041 6 C -0.554 4.554 7 H 0.062 0.938 8 C -0.188 4.188 9 N -0.589 5.589 10 Si 0.761 3.239 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.185 1.185 14 C -0.156 4.156 15 H 0.104 0.896 16 C -0.149 4.149 17 C -0.213 4.213 18 S -0.144 6.144 19 H 0.088 0.912 20 H 0.056 0.944 21 H 0.077 0.923 22 H 0.101 0.899 23 H 0.069 0.931 24 H 0.016 0.984 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.585 -13.032 -6.429 14.618 hybrid contribution -0.188 1.199 0.365 1.267 sum 1.397 -11.833 -6.065 13.370 Atomic orbital electron populations 1.21819 0.95658 1.01917 1.01377 1.21611 0.95703 0.94896 1.02287 1.21010 0.92347 0.96476 0.98314 0.90569 1.19557 0.95922 0.93961 0.94662 1.21451 1.35425 0.93754 1.04766 0.93770 1.25850 0.96864 0.94920 1.01193 1.70043 1.49308 1.05502 1.34073 0.85855 0.79705 0.79088 0.79222 1.18873 1.21073 1.18490 1.24329 0.99012 0.96717 0.95547 0.89625 1.22972 0.94771 1.01728 0.95399 1.24148 1.00171 1.05313 0.91650 1.89004 1.40802 1.44788 1.39763 0.91198 0.94443 0.92259 0.89933 0.93110 0.98429 0.96164 0.92690 0.86692 0.87796 0.86401 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.56 71.98 0.69 -3.60 16 2 C -0.11 -3.33 4.43 30.59 0.14 -3.20 16 3 C -0.06 -2.34 1.82 -10.79 -0.02 -2.36 16 4 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 5 C 0.00 -0.18 3.40 29.85 0.10 -0.07 16 6 C -0.52 -29.47 8.90 25.60 0.23 -29.24 16 7 H 0.04 2.70 7.35 -2.91 -0.02 2.68 16 8 C 0.01 0.50 5.47 84.66 0.46 0.96 16 9 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 10 Si 0.94 46.05 27.37 68.60 1.88 47.93 16 11 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 13 H -0.26 -12.48 6.69 99.48 0.67 -11.82 16 14 C -0.03 -0.97 3.27 30.61 0.10 -0.87 16 15 H 0.09 3.61 6.88 -2.39 -0.02 3.59 16 16 C -0.11 -2.64 7.06 30.62 0.22 -2.43 16 17 C -0.06 -1.53 7.98 71.99 0.57 -0.96 16 18 S -0.37 -12.62 22.26 -56.49 -1.26 -13.88 16 19 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 20 H 0.04 1.19 6.74 -2.39 -0.02 1.18 16 21 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.08 2.13 6.45 -2.39 -0.02 2.12 16 23 H 0.05 1.75 6.99 -2.39 -0.02 1.73 16 24 H 0.00 -0.13 7.54 -2.39 -0.02 -0.15 16 25 H 0.02 0.95 5.64 -2.38 -0.01 0.94 16 26 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 27 H 0.11 2.37 6.50 -2.39 -0.02 2.36 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -66.21 247.61 4.47 -61.75 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.06 Total: 5.41 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 2.49 Total: -41.77 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.30 Total: -59.44 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Atomic # 16 Polarization: -12.62 SS G_CDS: -1.26 Total: -13.88 kcal Total: -66.21 4.47 -61.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643314.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.853 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds