Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 H 1.08994 * 109.47357 * 53.28027 * 3 2 1 5 5 C 1.53000 * 109.46654 * 293.27966 * 3 2 1 6 6 C 1.50701 * 109.47117 * 74.30934 * 5 3 2 7 7 H 1.07997 * 120.00203 * 5.09302 * 6 5 3 8 8 C 1.37883 * 119.99785 * 184.82465 * 6 5 3 9 9 N 1.31515 * 120.00242 * 0.27063 * 8 6 5 10 10 Si 1.86796 * 119.99652 * 180.27286 * 8 6 5 11 11 H 1.48498 * 109.47571 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47093 * 120.00067 * 10 8 6 13 13 H 1.48500 * 109.47059 * 239.99801 * 10 8 6 14 14 C 1.52998 * 109.46873 * 173.28531 * 3 2 1 15 15 H 1.09005 * 113.40536 * 187.86696 * 14 3 2 16 16 C 1.55887 * 114.38143 * 321.54450 * 14 3 2 17 17 C 1.55882 * 102.94930 * 137.59988 * 16 14 3 18 18 S 1.83080 * 82.44045 * 335.79662 * 17 16 14 19 19 H 1.08995 * 109.47527 * 315.44427 * 1 2 3 20 20 H 1.09000 * 109.47116 * 75.44332 * 1 2 3 21 21 H 1.09006 * 109.47212 * 195.43799 * 1 2 3 22 22 H 1.08998 * 109.47175 * 239.99803 * 2 1 3 23 23 H 1.08999 * 109.46853 * 119.99366 * 2 1 3 24 24 H 1.09000 * 109.47684 * 314.30351 * 5 3 2 25 25 H 1.09004 * 109.47056 * 194.30423 * 5 3 2 26 26 H 0.96995 * 119.99611 * 179.97438 * 9 8 6 27 27 H 1.08999 * 110.82476 * 256.13599 * 16 14 3 28 28 H 1.09002 * 110.81861 * 19.06759 * 16 14 3 29 29 H 1.09000 * 114.37830 * 222.40065 * 17 16 14 30 30 H 1.09004 * 114.41630 * 89.19157 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5818 1.9899 0.8237 5 6 1.6724 2.1133 -1.3251 6 6 0.1986 2.4276 -1.3372 7 1 -0.3987 2.2502 -0.4550 8 6 -0.3863 2.9469 -2.4727 9 7 0.3410 3.1630 -3.5470 10 14 -2.2116 3.3437 -2.4852 11 1 -2.7996 3.0110 -1.1627 12 1 -2.4019 4.7901 -2.7623 13 1 -2.8846 2.5447 -3.5406 14 6 3.5606 1.4458 0.1687 15 1 3.9780 2.4423 0.3138 16 6 4.1004 0.3706 1.1599 17 6 5.3566 -0.1848 0.4226 18 16 4.4589 0.4207 -1.0537 19 1 -0.3634 0.7322 0.7210 20 1 -0.3633 0.2583 -0.9947 21 1 -0.3634 -0.9906 0.2736 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.9073 1.4410 -2.1502 25 1 2.2416 3.0364 -1.4353 26 1 -0.0706 3.5279 -4.3459 27 1 4.3786 0.8251 2.1108 28 1 3.3632 -0.4169 1.3164 29 1 5.4640 -1.2684 0.4709 30 1 6.2802 0.3520 0.6392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643317.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = 2.096067 kcal Electronic energy + Delta-G solvation = -11296.861156 eV Core-core repulsion = 9411.492289 eV Total energy + Delta-G solvation = -1885.368867 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.20448 -33.79456 -32.03463 -29.09979 -26.99607 -23.87758 -22.24040 -21.12630 -19.10905 -16.43611 -16.00380 -14.98147 -14.55369 -14.12179 -13.12842 -13.00707 -12.67150 -12.51245 -11.94379 -11.51098 -11.24288 -11.06428 -10.92588 -10.73640 -10.52666 -10.29504 -9.88090 -9.80491 -9.18613 -8.90405 -8.61808 -8.28676 -7.20907 -5.95039 -3.94388 2.09711 2.62216 3.32527 3.40664 3.43446 4.47988 4.77789 4.83032 5.08921 5.39911 5.53127 5.57537 5.67907 5.83274 5.88284 6.12829 6.24105 6.46732 6.63042 6.69808 6.81412 7.07611 7.17498 7.44377 7.72112 7.86074 8.04886 8.45796 9.09766 9.65997 11.16313 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.055851 B = 0.009831 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.215928 B = 2847.523548 C = 3127.454333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.066 4.066 4 H 0.072 0.928 5 C 0.031 3.969 6 C -0.512 4.512 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.021 4.021 15 H 0.104 0.896 16 C -0.154 4.154 17 C -0.088 4.088 18 S -0.306 6.306 19 H 0.046 0.954 20 H 0.083 0.917 21 H 0.025 0.975 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.027 0.973 25 H 0.009 0.991 26 H 0.258 0.742 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -5.620 8.973 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.085 4.085 4 H 0.090 0.910 5 C -0.007 4.007 6 C -0.550 4.550 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.149 4.149 15 H 0.122 0.878 16 C -0.192 4.192 17 C -0.237 4.237 18 S -0.081 6.081 19 H 0.065 0.935 20 H 0.102 0.898 21 H 0.044 0.956 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.856 -5.775 7.458 11.103 hybrid contribution -0.865 0.575 0.944 1.403 sum 4.991 -5.200 8.402 11.070 Atomic orbital electron populations 1.21976 0.95720 0.98243 1.04204 1.21591 0.96270 0.96058 1.00501 1.21204 0.88012 0.97165 1.02130 0.91028 1.19121 0.96309 0.95097 0.90145 1.21403 0.94051 1.41155 0.98373 0.91763 1.25017 0.97679 0.96048 0.95871 1.69989 1.35410 1.45162 1.02773 0.86635 0.86015 0.77969 0.78016 1.19696 1.21175 1.21123 1.24715 1.00226 0.98323 0.91648 0.87784 1.23868 0.96249 0.99378 0.99751 1.24516 0.99187 1.03792 0.96207 1.88757 1.46564 1.55303 1.17444 0.93461 0.89809 0.95613 0.91510 0.93927 0.95504 0.97263 0.93183 0.91424 0.87835 0.88046 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.34 37.16 0.31 -2.46 16 2 C -0.11 -1.99 4.58 -26.73 -0.12 -2.11 16 3 C -0.07 -1.31 2.18 -90.62 -0.20 -1.51 16 4 H 0.07 1.42 7.94 -51.93 -0.41 1.00 16 5 C 0.03 0.78 4.15 -27.88 -0.12 0.67 16 6 C -0.51 -13.88 6.59 -34.44 -0.23 -14.11 16 7 H 0.06 1.67 5.70 -52.49 -0.30 1.37 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C -0.02 -0.36 4.40 -25.19 -0.11 -0.47 16 15 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 16 C -0.15 -2.08 6.33 -23.65 -0.15 -2.23 16 17 C -0.09 -1.13 9.09 38.70 0.35 -0.78 16 18 S -0.31 -5.54 22.16 -107.50 -2.38 -7.92 16 19 H 0.05 0.90 7.02 -51.93 -0.36 0.53 16 20 H 0.08 1.87 6.30 -51.93 -0.33 1.54 16 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.07 1.34 7.29 -51.93 -0.38 0.96 16 23 H 0.04 0.68 5.56 -51.93 -0.29 0.39 16 24 H 0.03 0.76 7.88 -51.93 -0.41 0.35 16 25 H 0.01 0.25 8.06 -51.93 -0.42 -0.17 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.39 5.16 -51.93 -0.27 1.12 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 247.35 15.07 3.73 3.73 Total: -1.00 -29.67 247.35 -7.71 -37.39 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.42 Total: -1.88 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.36 Total: -21.55 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -2.38 Total: -7.92 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.67 -7.71 -37.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643317.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.484 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds