Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 H 1.08994 * 109.47357 * 53.28027 * 3 2 1 5 5 C 1.53000 * 109.46654 * 293.27966 * 3 2 1 6 6 C 1.50701 * 109.47117 * 74.30934 * 5 3 2 7 7 H 1.07997 * 120.00203 * 5.09302 * 6 5 3 8 8 C 1.37883 * 119.99785 * 184.82465 * 6 5 3 9 9 N 1.31515 * 120.00242 * 0.27063 * 8 6 5 10 10 Si 1.86796 * 119.99652 * 180.27286 * 8 6 5 11 11 H 1.48498 * 109.47571 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47093 * 120.00067 * 10 8 6 13 13 H 1.48500 * 109.47059 * 239.99801 * 10 8 6 14 14 C 1.52998 * 109.46873 * 173.28531 * 3 2 1 15 15 H 1.09005 * 113.40536 * 187.86696 * 14 3 2 16 16 C 1.55887 * 114.38143 * 321.54450 * 14 3 2 17 17 C 1.55882 * 102.94930 * 137.59988 * 16 14 3 18 18 S 1.83080 * 82.44045 * 335.79662 * 17 16 14 19 19 H 1.08995 * 109.47527 * 315.44427 * 1 2 3 20 20 H 1.09000 * 109.47116 * 75.44332 * 1 2 3 21 21 H 1.09006 * 109.47212 * 195.43799 * 1 2 3 22 22 H 1.08998 * 109.47175 * 239.99803 * 2 1 3 23 23 H 1.08999 * 109.46853 * 119.99366 * 2 1 3 24 24 H 1.09000 * 109.47684 * 314.30351 * 5 3 2 25 25 H 1.09004 * 109.47056 * 194.30423 * 5 3 2 26 26 H 0.96995 * 119.99611 * 179.97438 * 9 8 6 27 27 H 1.08999 * 110.82476 * 256.13599 * 16 14 3 28 28 H 1.09002 * 110.81861 * 19.06759 * 16 14 3 29 29 H 1.09000 * 114.37830 * 222.40065 * 17 16 14 30 30 H 1.09004 * 114.41630 * 89.19157 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5818 1.9899 0.8237 5 6 1.6724 2.1133 -1.3251 6 6 0.1986 2.4276 -1.3372 7 1 -0.3987 2.2502 -0.4550 8 6 -0.3863 2.9469 -2.4727 9 7 0.3410 3.1630 -3.5470 10 14 -2.2116 3.3437 -2.4852 11 1 -2.7996 3.0110 -1.1627 12 1 -2.4019 4.7901 -2.7623 13 1 -2.8846 2.5447 -3.5406 14 6 3.5606 1.4458 0.1687 15 1 3.9780 2.4423 0.3138 16 6 4.1004 0.3706 1.1599 17 6 5.3566 -0.1848 0.4226 18 16 4.4589 0.4207 -1.0537 19 1 -0.3634 0.7322 0.7210 20 1 -0.3633 0.2583 -0.9947 21 1 -0.3634 -0.9906 0.2736 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.9073 1.4410 -2.1502 25 1 2.2416 3.0364 -1.4353 26 1 -0.0706 3.5279 -4.3459 27 1 4.3786 0.8251 2.1108 28 1 3.3632 -0.4169 1.3164 29 1 5.4640 -1.2684 0.4709 30 1 6.2802 0.3520 0.6392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643317.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = -15.051384 kcal Electronic energy + Delta-G solvation = -11297.604725 eV Core-core repulsion = 9411.492289 eV Total energy + Delta-G solvation = -1886.112437 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.72487 -35.38235 -33.89860 -30.74776 -28.79029 -25.48552 -23.86941 -22.56117 -20.68078 -18.45590 -17.38725 -16.57376 -16.22264 -15.82396 -14.61515 -14.42337 -14.09168 -13.95173 -13.67638 -13.21242 -13.00660 -12.73840 -12.50329 -12.37260 -12.28643 -11.86975 -11.61398 -11.38436 -11.00912 -10.80022 -10.43872 -9.98810 -8.63682 -8.13569 -6.19428 0.85142 1.39377 1.40165 1.40625 1.52549 2.43160 3.20003 3.62406 3.68984 4.00201 4.14858 4.26634 4.43941 4.64532 4.70724 4.80894 4.89255 5.00438 5.06889 5.15250 5.28305 5.41038 5.50621 5.64066 5.78100 5.85726 5.91721 6.30513 6.94586 7.45503 8.99091 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.055851 B = 0.009831 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.215928 B = 2847.523548 C = 3127.454333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.059 4.059 4 H 0.079 0.921 5 C 0.041 3.959 6 C -0.512 4.512 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.941 5.941 10 Si 0.955 3.045 11 H -0.254 1.254 12 H -0.284 1.284 13 H -0.285 1.285 14 C -0.018 4.018 15 H 0.103 0.897 16 C -0.138 4.138 17 C -0.047 4.047 18 S -0.415 6.415 19 H 0.049 0.951 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.083 0.917 24 H -0.013 1.013 25 H -0.027 1.027 26 H 0.258 0.742 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 -6.666 11.899 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.079 4.079 4 H 0.097 0.903 5 C 0.004 3.996 6 C -0.550 4.550 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.582 5.582 10 Si 0.781 3.219 11 H -0.178 1.178 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.147 4.147 15 H 0.121 0.879 16 C -0.176 4.176 17 C -0.194 4.194 18 S -0.191 6.191 19 H 0.068 0.932 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.101 0.899 24 H 0.005 0.995 25 H -0.008 1.008 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.144 0.856 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.777 -6.828 10.413 13.727 hybrid contribution -0.751 0.883 0.033 1.160 sum 5.026 -5.945 10.446 13.028 Atomic orbital electron populations 1.21886 0.96146 0.99998 1.01858 1.21527 0.95803 0.94999 1.01363 1.21006 0.90502 0.97666 0.98688 0.90269 1.18923 0.95322 0.93030 0.92329 1.21831 0.94947 1.39698 0.98566 0.90449 1.25960 1.02610 0.96254 0.95614 1.70156 1.37625 1.46829 1.03608 0.85529 0.80182 0.77531 0.78671 1.17798 1.20970 1.21081 1.24676 0.97977 0.99673 0.92328 0.87863 1.23648 0.96347 0.97912 0.99675 1.24765 0.99458 1.05410 0.89802 1.89211 1.49456 1.56945 1.23512 0.93176 0.93776 0.92677 0.93682 0.89892 0.99502 1.00823 0.93339 0.88020 0.87326 0.85605 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.34 71.98 0.60 -4.63 16 2 C -0.10 -3.56 4.58 30.59 0.14 -3.42 16 3 C -0.06 -2.34 2.18 -10.79 -0.02 -2.36 16 4 H 0.08 3.01 7.94 -2.39 -0.02 2.99 16 5 C 0.04 2.21 4.15 29.85 0.12 2.33 16 6 C -0.51 -28.39 6.59 25.60 0.17 -28.22 16 7 H 0.08 4.00 5.70 -2.91 -0.02 3.98 16 8 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 9 N -0.94 -59.27 13.29 21.45 0.28 -58.99 16 10 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 11 H -0.25 -11.08 7.11 99.48 0.71 -10.38 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 C -0.02 -0.61 4.40 31.59 0.14 -0.47 16 15 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 16 C -0.14 -3.14 6.33 32.59 0.21 -2.93 16 17 C -0.05 -1.01 9.09 72.98 0.66 -0.35 16 18 S -0.42 -15.05 22.16 -56.49 -1.25 -16.30 16 19 H 0.05 1.79 7.02 -2.39 -0.02 1.77 16 20 H 0.04 1.96 6.30 -2.39 -0.02 1.95 16 21 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.04 1.81 7.29 -2.39 -0.02 1.80 16 23 H 0.08 2.32 5.56 -2.39 -0.01 2.30 16 24 H -0.01 -0.82 7.88 -2.39 -0.02 -0.84 16 25 H -0.03 -1.57 8.06 -2.38 -0.02 -1.59 16 26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.11 2.38 5.16 -2.39 -0.01 2.37 16 29 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -68.18 247.35 4.64 -63.53 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.10 Total: 4.97 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 2.48 Total: -40.06 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.28 Total: -58.99 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -15.05 SS G_CDS: -1.25 Total: -16.30 kcal Total: -68.18 4.64 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643317.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.483 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds