Wall clock time and date at job start Mon Mar 30 2020 03:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 H 1.08995 * 110.36121 * 65.69907 * 13 2 1 15 15 C 1.54277 * 110.39742 * 303.37218 * 13 2 1 16 16 C 1.54021 * 108.84291 * 213.34894 * 15 13 2 17 17 C 1.55144 * 106.98185 * 47.10583 * 16 15 13 18 18 S 1.83098 * 110.39908 * 188.02520 * 13 2 1 19 19 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 20 20 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 21 21 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 23 23 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 24 24 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 25 25 H 1.08998 * 109.61384 * 333.18058 * 15 13 2 26 26 H 1.09003 * 109.60751 * 93.33961 * 15 13 2 27 27 H 1.09004 * 109.88789 * 287.74697 * 16 15 13 28 28 H 1.08995 * 109.97785 * 166.51762 * 16 15 13 29 29 H 1.09003 * 110.85320 * 199.75926 * 17 16 15 30 30 H 1.08992 * 110.85341 * 76.11886 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.0789 1.9169 -5.1935 11 1 1.9779 -0.1465 -6.4630 12 1 0.0068 0.6618 -5.3040 13 6 2.0400 -0.7214 1.2491 14 1 1.7699 -1.7768 1.2144 15 6 1.4692 -0.0618 2.5217 16 6 2.5166 -0.1619 3.6465 17 6 3.8742 0.2845 3.0425 18 16 3.8549 -0.5316 1.3996 19 1 -0.3634 0.5137 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.6054 -1.7198 -1.2952 23 1 3.1264 -0.7994 -1.2056 24 1 2.9146 -1.8469 -4.7323 25 1 1.2468 0.9865 2.3221 26 1 0.5563 -0.5759 2.8222 27 1 2.5860 -1.1914 3.9979 28 1 2.2417 0.4957 4.4710 29 1 4.7057 -0.0787 3.6465 30 1 3.9142 1.3686 2.9370 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:51 Heat of formation + Delta-G solvation = -32.320421 kcal Electronic energy + Delta-G solvation = -11105.142526 eV Core-core repulsion = 9218.281248 eV Total energy + Delta-G solvation = -1886.861278 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -36.96899 -34.19520 -32.09722 -28.33560 -26.66118 -24.98074 -22.94217 -20.50976 -19.21643 -16.63241 -15.93275 -15.16926 -14.52807 -13.90784 -13.70839 -13.20354 -12.58812 -12.38392 -11.85329 -11.62681 -11.31511 -11.12260 -10.86224 -10.83618 -10.69860 -10.37484 -10.27835 -9.91231 -9.31823 -9.02981 -8.93434 -8.26313 -7.15134 -5.91839 -3.93248 2.27278 2.90324 3.37323 3.41778 3.43887 4.51053 4.78645 4.86535 5.10054 5.35248 5.42696 5.44665 5.66868 5.74859 5.83063 5.97686 5.99501 6.14628 6.24579 6.32431 6.49305 6.94506 7.05896 7.17709 7.76136 7.92196 8.08353 8.50134 9.12524 9.69264 11.19541 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.057488 B = 0.008860 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.941378 B = 3159.353121 C = 3416.484549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.029 4.029 14 H 0.092 0.908 15 C -0.126 4.126 16 C -0.127 4.127 17 C -0.088 4.088 18 S -0.278 6.278 19 H 0.033 0.967 20 H 0.065 0.935 21 H 0.045 0.955 22 H 0.013 0.987 23 H 0.026 0.974 24 H 0.260 0.740 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 2.815 13.267 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.157 4.157 14 H 0.110 0.890 15 C -0.165 4.165 16 C -0.165 4.165 17 C -0.236 4.236 18 S -0.051 6.051 19 H 0.052 0.948 20 H 0.084 0.916 21 H 0.064 0.936 22 H 0.031 0.969 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.786 2.375 12.415 12.665 hybrid contribution -1.119 0.735 -0.193 1.353 sum -1.905 3.110 12.222 12.755 Atomic orbital electron populations 1.21778 0.95824 1.00980 1.00486 1.21362 0.94823 0.99404 0.93573 0.91629 1.19168 0.96766 0.95039 0.89957 1.21167 1.34813 1.08198 0.91000 0.92724 1.25007 0.95354 0.95082 0.99020 1.69961 1.38933 1.21128 1.23401 0.86709 0.78788 0.80166 0.82622 1.20303 1.21363 1.20359 1.24006 0.90514 1.03091 0.98129 0.88964 1.22492 0.98805 1.02051 0.93143 1.22583 0.93282 1.02162 0.98512 1.24221 1.00127 1.02787 0.96445 1.87972 1.12995 1.79395 1.24702 0.94808 0.91591 0.93567 0.96889 0.95602 0.93059 0.90755 0.90443 0.90811 0.90664 0.88801 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.72 37.16 0.32 -2.09 16 2 C -0.07 -1.48 1.79 -90.62 -0.16 -1.64 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.73 4.38 -27.88 -0.12 0.61 16 5 C -0.51 -14.63 8.41 -34.44 -0.29 -14.92 16 6 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C -0.03 -0.51 2.81 -26.06 -0.07 -0.58 16 14 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 15 C -0.13 -1.70 4.76 -25.53 -0.12 -1.82 16 16 C -0.13 -1.46 6.46 -25.06 -0.16 -1.62 16 17 C -0.09 -1.15 7.38 38.29 0.28 -0.87 16 18 S -0.28 -5.14 21.68 -107.50 -2.33 -7.47 16 19 H 0.03 0.51 6.96 -51.93 -0.36 0.15 16 20 H 0.07 1.31 6.95 -51.93 -0.36 0.95 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.03 0.74 7.21 -51.93 -0.37 0.37 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.07 1.00 7.54 -51.93 -0.39 0.61 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -30.72 253.29 -8.02 -38.74 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.80 Total: -3.90 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -0.42 Total: -21.39 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -2.33 Total: -7.47 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.72 -8.02 -38.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.418 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds