Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47227 * 2 1 4 4 C 1.53002 * 109.46707 * 119.99504 * 2 1 3 5 5 C 1.50700 * 109.47241 * 294.99779 * 4 2 1 6 6 H 1.08002 * 120.00307 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47203 * 90.00110 * 9 7 5 11 11 H 1.48499 * 109.46913 * 210.00117 * 9 7 5 12 12 H 1.48502 * 109.46700 * 330.00145 * 9 7 5 13 13 C 1.52994 * 109.47327 * 239.99054 * 2 1 3 14 14 H 1.08997 * 110.99966 * 302.76264 * 13 2 1 15 15 C 1.55158 * 111.12722 * 67.02583 * 13 2 1 16 16 C 1.52948 * 108.95795 * 159.34872 * 15 13 2 17 17 C 1.53707 * 112.49058 * 329.89629 * 16 15 13 18 18 S 1.83387 * 104.97060 * 2.82929 * 17 16 15 19 19 H 1.09004 * 109.47575 * 300.00642 * 1 2 3 20 20 H 1.09000 * 109.46773 * 60.00559 * 1 2 3 21 21 H 1.09001 * 109.47398 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47585 * 54.99898 * 4 2 1 23 23 H 1.09001 * 109.47010 * 175.00405 * 4 2 1 24 24 H 0.96993 * 120.00103 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.60658 * 39.41907 * 15 13 2 26 26 H 1.08993 * 109.60106 * 279.27873 * 15 13 2 27 27 H 1.08997 * 108.88313 * 209.10400 * 16 15 13 28 28 H 1.09000 * 108.88513 * 90.69418 * 16 15 13 29 29 H 1.08997 * 110.33731 * 121.70083 * 17 16 15 30 30 H 1.08996 * 110.33917 * 243.84353 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6412 0.0573 2.4766 6 1 1.0799 0.9744 2.3757 7 6 1.9930 -0.4014 3.7284 8 7 2.6770 -1.5180 3.8514 9 14 1.4983 0.5632 5.2497 10 1 0.1713 0.0940 5.7234 11 1 2.5078 0.3539 6.3184 12 1 1.4223 2.0083 4.9164 13 6 2.0400 -0.7214 -1.2491 14 1 1.6510 -1.7384 -1.2989 15 6 1.6939 0.0745 -2.5351 16 6 2.6263 -0.3724 -3.6622 17 6 3.9989 -0.8295 -3.1432 18 16 3.8786 -0.7105 -1.3171 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.6052 -1.7197 1.2954 23 1 3.1262 -0.7994 1.2058 24 1 2.9248 -1.8404 4.7319 25 1 1.8263 1.1408 -2.3521 26 1 0.6593 -0.1194 -2.8179 27 1 2.7690 0.4590 -4.3525 28 1 2.1595 -1.1977 -4.1999 29 1 4.1939 -1.8590 -3.4437 30 1 4.7835 -0.1715 -3.5166 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -31.943253 kcal Electronic energy + Delta-G solvation = -11077.339012 eV Core-core repulsion = 9190.494089 eV Total energy + Delta-G solvation = -1886.844923 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -36.84812 -34.29685 -32.12649 -28.40619 -26.71959 -25.05402 -23.02113 -20.30355 -19.23564 -16.56946 -16.01413 -15.08997 -14.52196 -14.03739 -13.81934 -12.97561 -12.77639 -12.29167 -11.96001 -11.65745 -11.52082 -11.09890 -10.84822 -10.65729 -10.54204 -10.34558 -10.31049 -9.95397 -9.35620 -8.99287 -8.94853 -8.27637 -7.16961 -5.92891 -3.94620 2.30707 2.87858 3.35383 3.41751 3.44908 4.50232 4.77193 4.85785 5.15221 5.29457 5.42455 5.48970 5.66374 5.79638 5.81857 6.00847 6.03816 6.12919 6.22830 6.34292 6.46844 6.91404 7.04003 7.13855 7.75252 7.89383 8.06979 8.48226 9.11348 9.68078 11.18316 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.058423 B = 0.008847 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.150012 B = 3164.056330 C = 3470.195491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 H 0.067 0.933 4 C 0.027 3.973 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.023 4.023 14 H 0.088 0.912 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.090 4.090 18 S -0.275 6.275 19 H 0.066 0.934 20 H 0.033 0.967 21 H 0.046 0.954 22 H 0.015 0.985 23 H 0.026 0.974 24 H 0.259 0.741 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 1.977 -13.160 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 H 0.085 0.915 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.151 4.151 14 H 0.107 0.893 15 C -0.163 4.163 16 C -0.164 4.164 17 C -0.238 4.238 18 S -0.047 6.047 19 H 0.085 0.915 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.682 1.911 -12.194 12.362 hybrid contribution -1.015 0.290 0.000 1.056 sum -1.698 2.201 -12.194 12.507 Atomic orbital electron populations 1.21740 0.95473 1.01055 1.00580 1.21170 0.95103 0.99430 0.93122 0.91493 1.19191 0.96697 0.95219 0.89916 1.21208 1.34791 1.08319 0.90999 0.92622 1.25016 0.95306 0.95100 0.99047 1.69977 1.38754 1.21214 1.23323 0.86643 0.78167 0.80443 0.83044 1.20771 1.21282 1.19921 1.24340 0.90535 1.02116 0.98131 0.89338 1.22523 0.99497 1.01213 0.93074 1.21932 0.93964 1.01506 0.98978 1.23907 0.99836 1.03968 0.96084 1.88338 1.12395 1.97675 1.06272 0.91459 0.94774 0.93491 0.96671 0.95541 0.93098 0.90610 0.90598 0.91108 0.91688 0.90016 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.86 37.16 0.33 -2.03 16 2 C -0.07 -1.41 1.94 -90.62 -0.18 -1.59 16 3 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 4 C 0.03 0.71 4.34 -27.88 -0.12 0.59 16 5 C -0.51 -14.62 8.41 -34.44 -0.29 -14.91 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C -0.02 -0.40 2.82 -25.59 -0.07 -0.47 16 14 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 15 C -0.12 -1.69 5.11 -25.62 -0.13 -1.82 16 16 C -0.13 -1.47 6.33 -26.39 -0.17 -1.64 16 17 C -0.09 -1.19 7.38 37.52 0.28 -0.91 16 18 S -0.27 -5.13 21.39 -107.50 -2.30 -7.43 16 19 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 20 H 0.03 0.51 7.33 -51.93 -0.38 0.13 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.03 0.76 6.93 -51.93 -0.36 0.40 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.08 1.05 8.02 -51.93 -0.42 0.64 16 26 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 253.71 15.07 3.82 3.82 Total: -1.00 -30.61 253.71 -8.02 -38.62 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -4.81 Total: -4.03 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.45 Total: -21.25 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.30 Total: -7.43 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.61 -8.02 -38.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.681 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds