Wall clock time and date at job start Mon Mar 30 2020 03:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47227 * 2 1 4 4 C 1.53002 * 109.46707 * 119.99504 * 2 1 3 5 5 C 1.50700 * 109.47241 * 294.99779 * 4 2 1 6 6 H 1.08002 * 120.00307 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47203 * 90.00110 * 9 7 5 11 11 H 1.48499 * 109.46913 * 210.00117 * 9 7 5 12 12 H 1.48502 * 109.46700 * 330.00145 * 9 7 5 13 13 C 1.52994 * 109.47327 * 239.99054 * 2 1 3 14 14 H 1.08997 * 110.99966 * 302.76264 * 13 2 1 15 15 C 1.55158 * 111.12722 * 67.02583 * 13 2 1 16 16 C 1.52948 * 108.95795 * 159.34872 * 15 13 2 17 17 C 1.53707 * 112.49058 * 329.89629 * 16 15 13 18 18 S 1.83387 * 104.97060 * 2.82929 * 17 16 15 19 19 H 1.09004 * 109.47575 * 300.00642 * 1 2 3 20 20 H 1.09000 * 109.46773 * 60.00559 * 1 2 3 21 21 H 1.09001 * 109.47398 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47585 * 54.99898 * 4 2 1 23 23 H 1.09001 * 109.47010 * 175.00405 * 4 2 1 24 24 H 0.96993 * 120.00103 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.60658 * 39.41907 * 15 13 2 26 26 H 1.08993 * 109.60106 * 279.27873 * 15 13 2 27 27 H 1.08997 * 108.88313 * 209.10400 * 16 15 13 28 28 H 1.09000 * 108.88513 * 90.69418 * 16 15 13 29 29 H 1.08997 * 110.33731 * 121.70083 * 17 16 15 30 30 H 1.08996 * 110.33917 * 243.84353 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6412 0.0573 2.4766 6 1 1.0799 0.9744 2.3757 7 6 1.9930 -0.4014 3.7284 8 7 2.6770 -1.5180 3.8514 9 14 1.4983 0.5632 5.2497 10 1 0.1713 0.0940 5.7234 11 1 2.5078 0.3539 6.3184 12 1 1.4223 2.0083 4.9164 13 6 2.0400 -0.7214 -1.2491 14 1 1.6510 -1.7384 -1.2989 15 6 1.6939 0.0745 -2.5351 16 6 2.6263 -0.3724 -3.6622 17 6 3.9989 -0.8295 -3.1432 18 16 3.8786 -0.7105 -1.3171 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.6052 -1.7197 1.2954 23 1 3.1262 -0.7994 1.2058 24 1 2.9248 -1.8404 4.7319 25 1 1.8263 1.1408 -2.3521 26 1 0.6593 -0.1194 -2.8179 27 1 2.7690 0.4590 -4.3525 28 1 2.1595 -1.1977 -4.1999 29 1 4.1939 -1.8590 -3.4437 30 1 4.7835 -0.1715 -3.5166 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:52 Heat of formation + Delta-G solvation = -49.633973 kcal Electronic energy + Delta-G solvation = -11078.106140 eV Core-core repulsion = 9190.494089 eV Total energy + Delta-G solvation = -1887.612050 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.28084 -35.81590 -34.11489 -29.94443 -28.44572 -26.47879 -24.80283 -21.60790 -20.80283 -18.53198 -17.58593 -16.60810 -16.16713 -15.54013 -15.12673 -14.49070 -14.40145 -13.95633 -13.38958 -13.24348 -12.93112 -12.75638 -12.57012 -12.24656 -12.20078 -11.97363 -11.69555 -11.44731 -11.16736 -10.90681 -10.63479 -10.42025 -8.65185 -8.16664 -6.26792 1.02179 1.38591 1.40595 1.51318 1.62247 2.41554 3.16314 3.64003 3.84009 4.05664 4.15775 4.31005 4.38437 4.51735 4.64881 4.79374 4.81691 4.91269 5.03333 5.09407 5.20383 5.28544 5.36638 5.46545 5.56861 5.80442 5.88335 6.27658 6.89873 7.41133 8.95278 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.058423 B = 0.008847 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.150012 B = 3164.056330 C = 3470.195491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 H 0.057 0.943 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.063 0.937 7 C -0.005 4.005 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.263 1.263 13 C -0.011 4.011 14 H 0.084 0.916 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.064 4.064 18 S -0.381 6.381 19 H 0.049 0.951 20 H 0.075 0.925 21 H 0.046 0.954 22 H -0.016 1.016 23 H -0.008 1.008 24 H 0.261 0.739 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 3.150 -14.950 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 H 0.075 0.925 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.187 1.187 13 C -0.139 4.139 14 H 0.102 0.898 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.212 4.212 18 S -0.154 6.154 19 H 0.068 0.932 20 H 0.094 0.906 21 H 0.065 0.935 22 H 0.002 0.998 23 H 0.010 0.990 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.015 3.094 -13.998 14.477 hybrid contribution -0.555 -0.113 0.500 0.756 sum -2.570 2.980 -13.498 14.060 Atomic orbital electron populations 1.21667 0.93308 1.01412 1.01763 1.20957 0.96786 0.98234 0.92066 0.92455 1.19034 0.94508 0.94156 0.92614 1.21654 1.34474 1.08623 0.92073 0.91897 1.26002 0.95240 0.96135 1.02806 1.70133 1.40178 1.23130 1.24176 0.85482 0.78044 0.79264 0.78482 1.19568 1.21097 1.18689 1.24229 0.88558 1.02186 0.98897 0.89765 1.22513 1.01473 1.00292 0.91245 1.21949 0.92298 1.03355 0.98438 1.24029 1.01797 1.05365 0.89998 1.88690 1.15269 1.97878 1.13520 0.93214 0.90593 0.93527 0.99767 0.98987 0.93040 0.90782 0.87969 0.88403 0.89531 0.88765 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.86 71.98 0.64 -3.67 16 2 C -0.06 -2.52 1.94 -10.80 -0.02 -2.54 16 3 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 4 C 0.03 1.87 4.34 29.85 0.13 2.00 16 5 C -0.53 -30.86 8.41 25.60 0.22 -30.65 16 6 H 0.06 3.48 7.06 -2.91 -0.02 3.46 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -59.42 13.29 21.45 0.28 -59.13 16 9 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 13 C -0.01 -0.37 2.82 31.33 0.09 -0.28 16 14 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 15 C -0.12 -2.78 5.11 31.32 0.16 -2.62 16 16 C -0.12 -2.33 6.33 30.81 0.20 -2.14 16 17 C -0.06 -1.54 7.38 72.22 0.53 -1.00 16 18 S -0.38 -14.48 21.39 -56.49 -1.21 -15.69 16 19 H 0.05 1.90 6.95 -2.38 -0.02 1.89 16 20 H 0.08 2.03 7.33 -2.39 -0.02 2.01 16 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 22 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 23 H -0.01 -0.50 6.93 -2.39 -0.02 -0.52 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.07 1.82 8.02 -2.39 -0.02 1.80 16 26 H 0.10 1.96 7.85 -2.39 -0.02 1.94 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.45 253.71 4.59 -64.86 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.09 Total: 3.03 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 2.40 Total: -40.72 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.28 Total: -59.13 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: -14.48 SS G_CDS: -1.21 Total: -15.69 kcal Total: -69.45 4.59 -64.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.228 kcal (2) G-P(sol) polarization free energy of solvation -69.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds