Wall clock time and date at job start Mon Mar 30 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47265 * 2 1 4 4 C 1.53006 * 109.46612 * 240.00151 * 2 1 3 5 5 C 1.50699 * 109.47175 * 65.00175 * 4 2 1 6 6 H 1.08000 * 119.99844 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00084 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99884 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00258 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47363 * 89.99876 * 9 7 5 11 11 H 1.48505 * 109.47049 * 210.00279 * 9 7 5 12 12 H 1.48505 * 109.46817 * 329.99577 * 9 7 5 13 13 C 1.52995 * 109.47010 * 120.00284 * 2 1 3 14 14 H 1.09006 * 110.91595 * 182.15027 * 13 2 1 15 15 C 1.55136 * 110.86075 * 305.76120 * 13 2 1 16 16 C 1.53854 * 106.90124 * 160.29597 * 15 13 2 17 17 C 1.54272 * 108.92702 * 312.74455 * 16 15 13 18 18 S 1.83100 * 104.65178 * 27.95286 * 17 16 15 19 19 H 1.09004 * 109.47253 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47089 * 300.00007 * 1 2 3 21 21 H 1.08997 * 109.47323 * 59.99690 * 1 2 3 22 22 H 1.08996 * 109.46604 * 184.99885 * 4 2 1 23 23 H 1.08995 * 109.47353 * 304.99957 * 4 2 1 24 24 H 0.97002 * 119.99866 * 179.97438 * 8 7 5 25 25 H 1.09004 * 109.97300 * 40.93214 * 15 13 2 26 26 H 1.09000 * 109.97315 * 279.65823 * 15 13 2 27 27 H 1.08999 * 109.61104 * 192.82508 * 16 15 13 28 28 H 1.08998 * 109.61111 * 72.66497 * 16 15 13 29 29 H 1.09001 * 110.40303 * 269.16331 * 17 16 15 30 30 H 1.08997 * 110.40494 * 146.74843 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9930 -0.4016 -3.7283 8 7 2.6770 -1.5182 -3.8512 9 14 1.4994 0.5636 -5.2496 10 1 2.5649 1.5431 -5.5817 11 1 1.3126 -0.3702 -6.3892 12 1 0.2281 1.2849 -4.9873 13 6 2.0400 -0.7213 1.2492 14 1 3.1290 -0.7021 1.2923 15 6 1.4253 -0.1042 2.5330 16 6 1.5720 -1.1539 3.6482 17 6 1.1032 -2.5224 3.1121 18 16 1.4142 -2.4449 1.3094 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 3.1262 -0.7995 -1.2057 23 1 1.6053 -1.7198 -1.2953 24 1 2.9242 -1.8411 -4.7318 25 1 0.3714 0.1212 2.3700 26 1 1.9632 0.8043 2.8037 27 1 0.9602 -0.8670 4.5034 28 1 2.6161 -1.2191 3.9542 29 1 0.0403 -2.6636 3.3085 30 1 1.6839 -3.3267 3.5637 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646872.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:58 Heat of formation + Delta-G solvation = -46.258264 kcal Electronic energy + Delta-G solvation = -11151.085281 eV Core-core repulsion = 9263.619612 eV Total energy + Delta-G solvation = -1887.465669 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.38732 -35.77339 -34.07752 -29.90354 -28.35321 -26.46863 -24.68461 -21.77466 -20.78327 -18.54037 -17.28435 -16.62893 -16.49882 -15.30466 -15.11178 -14.91989 -14.32054 -13.82363 -13.39458 -13.07387 -12.86850 -12.58426 -12.49586 -12.30127 -12.25330 -12.04564 -11.67103 -11.55501 -11.08942 -10.87064 -10.60313 -10.41049 -8.53190 -8.16444 -6.26850 1.02139 1.38864 1.40796 1.51583 1.69173 2.41724 3.16404 3.70482 3.85134 4.01603 4.18112 4.30276 4.41291 4.48526 4.69921 4.78037 4.91231 4.92675 5.00810 5.03466 5.24315 5.31206 5.41431 5.53107 5.54059 5.82356 5.90516 6.27961 6.90224 7.41296 8.95463 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.068357 B = 0.008674 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.518873 B = 3227.250672 C = 3421.234976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 H 0.071 0.929 4 C 0.037 3.963 5 C -0.530 4.530 6 H 0.064 0.936 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.261 1.261 13 C -0.019 4.019 14 H 0.079 0.921 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.069 4.069 18 S -0.363 6.363 19 H 0.048 0.952 20 H 0.072 0.928 21 H 0.042 0.958 22 H -0.023 1.023 23 H -0.005 1.005 24 H 0.261 0.739 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 3.056 14.969 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.084 4.084 3 H 0.089 0.911 4 C -0.001 4.001 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.185 1.185 13 C -0.148 4.148 14 H 0.097 0.903 15 C -0.164 4.164 16 C -0.158 4.158 17 C -0.216 4.216 18 S -0.137 6.137 19 H 0.067 0.933 20 H 0.090 0.910 21 H 0.061 0.939 22 H -0.005 1.005 23 H 0.013 0.987 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.773 2.109 14.013 14.664 hybrid contribution 0.385 0.707 -0.488 0.941 sum -3.389 2.816 13.525 14.225 Atomic orbital electron populations 1.21768 0.94322 1.01642 1.00823 1.20961 0.96983 0.98239 0.92250 0.91054 1.18989 0.93507 0.94912 0.92657 1.21673 1.34487 1.08589 0.92089 0.91792 1.26012 0.95291 0.96094 1.02837 1.70143 1.40314 1.23048 1.24181 0.85472 0.79087 0.78307 0.78339 1.19739 1.21080 1.18539 1.24170 1.01173 0.90359 0.99067 0.90278 1.22822 1.02842 0.99667 0.91064 1.22275 1.03255 0.91362 0.98957 1.24098 1.05280 1.01634 0.90615 1.88339 1.86457 1.23989 1.14921 0.93292 0.90964 0.93920 1.00473 0.98706 0.93051 0.89424 0.88204 0.87327 0.90439 0.88212 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.36 71.98 0.60 -4.25 16 2 C -0.06 -2.68 2.30 -10.79 -0.02 -2.70 16 3 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 4 C 0.04 2.01 4.16 29.85 0.12 2.13 16 5 C -0.53 -30.83 8.41 25.60 0.22 -30.61 16 6 H 0.06 3.52 7.06 -2.91 -0.02 3.50 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -59.53 13.29 21.45 0.28 -59.25 16 9 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C -0.02 -0.67 3.09 31.32 0.10 -0.58 16 14 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 15 C -0.13 -2.96 5.76 31.61 0.18 -2.77 16 16 C -0.12 -2.27 6.39 31.31 0.20 -2.07 16 17 C -0.07 -1.60 7.34 72.41 0.53 -1.07 16 18 S -0.36 -13.40 20.14 -56.49 -1.14 -14.54 16 19 H 0.05 1.98 6.97 -2.38 -0.02 1.96 16 20 H 0.07 2.14 6.07 -2.39 -0.01 2.12 16 21 H 0.04 1.73 6.95 -2.39 -0.02 1.72 16 22 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 23 H -0.01 -0.33 7.28 -2.39 -0.02 -0.35 16 24 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.09 2.03 5.68 -2.38 -0.01 2.02 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -69.06 248.99 4.66 -64.40 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.10 Total: 3.59 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 2.39 Total: -41.77 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.28 Total: -59.25 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: -13.40 SS G_CDS: -1.14 Total: -14.54 kcal Total: -69.06 4.66 -64.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646872.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.140 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds