Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 C 1.53002 * 109.46788 * 239.99981 * 2 1 3 5 5 H 1.08997 * 109.47581 * 304.17124 * 4 2 1 6 6 C 1.50701 * 109.46865 * 184.17210 * 4 2 1 7 7 H 1.08003 * 120.00405 * 245.52638 * 6 4 2 8 8 C 1.37880 * 120.00089 * 65.53529 * 6 4 2 9 9 N 1.31520 * 119.99723 * 8.64517 * 8 6 4 10 10 Si 1.86792 * 120.00117 * 188.65005 * 8 6 4 11 11 H 1.48497 * 109.47417 * 89.99557 * 10 8 6 12 12 H 1.48503 * 109.47089 * 209.99754 * 10 8 6 13 13 H 1.48504 * 109.47153 * 329.99244 * 10 8 6 14 14 C 1.53002 * 109.47051 * 64.17841 * 4 2 1 15 15 C 1.53041 * 113.14905 * 275.56577 * 14 4 2 16 16 S 1.81423 * 89.89238 * 211.85483 * 15 14 4 17 17 C 1.53043 * 113.15107 * 175.19654 * 14 4 2 18 18 H 1.08993 * 109.47354 * 173.81237 * 1 2 3 19 19 H 1.09007 * 109.46797 * 293.81366 * 1 2 3 20 20 H 1.09005 * 109.47046 * 53.80756 * 1 2 3 21 21 H 1.08998 * 109.47113 * 120.00445 * 2 1 3 22 22 H 1.08997 * 109.47158 * 307.23889 * 3 2 1 23 23 H 1.08996 * 109.46966 * 67.24096 * 3 2 1 24 24 H 1.09005 * 109.47017 * 187.24161 * 3 2 1 25 25 H 0.97002 * 119.99720 * 180.02562 * 9 8 6 26 26 H 1.08998 * 112.49664 * 45.40608 * 14 4 2 27 27 H 1.09009 * 113.15002 * 327.11314 * 15 14 4 28 28 H 1.08995 * 113.15143 * 96.59362 * 15 14 4 29 29 H 1.09004 * 113.14572 * 263.40120 * 17 14 4 30 30 H 1.08995 * 113.15231 * 32.87818 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6169 -1.7251 -1.2875 6 6 3.5434 -0.8114 -1.1987 7 1 4.1409 -0.2837 -1.9274 8 6 4.1562 -1.5678 -0.2223 9 7 3.4355 -2.3441 0.5572 10 14 6.0100 -1.4898 -0.0065 11 1 6.3511 -0.4159 0.9608 12 1 6.5039 -2.7931 0.5063 13 1 6.6489 -1.1987 -1.3151 14 6 1.6175 0.0581 -2.4963 15 6 0.2012 -0.2810 -2.9666 16 16 0.7024 0.0224 -4.6836 17 6 2.1839 -0.5269 -3.7921 18 1 -0.3634 -1.0216 -0.1108 19 1 -0.3633 0.4150 0.9402 20 1 -0.3633 0.6069 -0.8294 21 1 1.8933 -0.5139 0.8899 22 1 1.5749 1.9923 -0.8181 23 1 1.7864 1.9175 0.9476 24 1 3.1224 1.4452 -0.1295 25 1 3.8666 -2.8760 1.2444 26 1 1.7920 1.1295 -2.3975 27 1 -0.0762 -1.3182 -2.7781 28 1 -0.5495 0.4235 -2.6085 29 1 3.0941 -0.0283 -4.1254 30 1 2.2889 -1.6114 -3.7627 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260650782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = -2.468962 kcal Electronic energy + Delta-G solvation = -11644.089430 eV Core-core repulsion = 9758.522608 eV Total energy + Delta-G solvation = -1885.566822 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.75599 -33.53499 -32.10358 -27.63386 -26.23650 -25.29126 -23.33940 -20.57574 -18.29047 -16.30472 -15.66296 -15.01510 -14.59972 -13.60861 -13.01558 -12.71622 -12.44183 -12.15772 -11.98308 -11.63599 -11.37315 -10.96575 -10.77786 -10.69170 -10.27672 -10.20594 -10.08442 -9.70271 -9.50369 -8.79097 -8.67285 -8.34579 -7.30634 -6.06285 -4.07372 2.39983 2.59440 3.28102 3.36019 3.38152 4.40247 5.24681 5.26584 5.46024 5.82267 5.95129 5.99551 6.10805 6.17440 6.24554 6.34354 6.46338 6.58248 6.66587 6.78372 6.89302 6.92733 7.35925 7.44903 7.72330 7.83749 7.96742 8.36622 8.94955 9.55679 11.02339 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.035544 B = 0.013024 C = 0.010790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.562338 B = 2149.320916 C = 2594.310004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.134 4.134 4 C 0.067 3.933 5 H 0.038 0.962 6 C -0.509 4.509 7 H 0.056 0.944 8 C 0.067 3.933 9 N -0.886 5.886 10 Si 0.883 3.117 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.079 4.079 15 C -0.060 4.060 16 S -0.382 6.382 17 C -0.039 4.039 18 H 0.045 0.955 19 H 0.033 0.967 20 H 0.043 0.957 21 H 0.084 0.916 22 H 0.036 0.964 23 H 0.026 0.974 24 H 0.063 0.937 25 H 0.260 0.740 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 3.580 -2.326 5.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.191 4.191 4 C 0.047 3.953 5 H 0.056 0.944 6 C -0.547 4.547 7 H 0.074 0.926 8 C -0.135 4.135 9 N -0.524 5.524 10 Si 0.711 3.289 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.098 4.098 15 C -0.208 4.208 16 S -0.156 6.156 17 C -0.187 4.187 18 H 0.064 0.936 19 H 0.052 0.948 20 H 0.062 0.938 21 H 0.102 0.898 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.017 3.871 -3.524 6.599 hybrid contribution 1.361 -0.383 1.136 1.814 sum -2.657 3.488 -2.388 4.993 Atomic orbital electron populations 1.22054 0.98685 1.00344 0.99433 1.21093 0.91644 0.95260 1.02579 1.21790 1.02137 0.96914 0.98258 1.18763 0.95800 0.93695 0.87079 0.94437 1.21015 0.90901 1.29320 1.13480 0.92573 1.24909 0.97605 0.94803 0.96218 1.69949 1.35326 1.26209 1.20921 0.86739 0.86365 0.77333 0.78462 1.20691 1.21439 1.19956 1.22664 0.89383 1.01523 0.96259 1.24669 1.02805 1.04565 0.88737 1.88626 1.17898 1.88164 1.20912 1.24305 0.95978 1.04166 0.94203 0.93592 0.94825 0.93783 0.89815 0.94540 0.95508 0.91835 0.93005 0.88484 0.88429 0.89555 0.89631 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.27 37.16 0.31 -2.33 16 2 C -0.09 -1.81 2.59 -90.62 -0.23 -2.05 16 3 C -0.13 -2.57 8.49 37.16 0.32 -2.25 16 4 C 0.07 1.48 1.32 -91.77 -0.12 1.36 16 5 H 0.04 0.92 7.84 -51.93 -0.41 0.51 16 6 C -0.51 -12.53 6.74 -34.44 -0.23 -12.77 16 7 H 0.06 1.38 7.48 -52.48 -0.39 0.99 16 8 C 0.07 1.72 5.18 -17.82 -0.09 1.63 16 9 N -0.89 -23.94 12.12 55.43 0.67 -23.27 16 10 Si 0.88 20.29 29.55 -169.99 -5.02 15.27 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 C -0.08 -1.48 2.34 -90.58 -0.21 -1.69 16 15 C -0.06 -1.02 6.00 37.18 0.22 -0.80 16 16 S -0.38 -6.90 24.79 -107.50 -2.67 -9.56 16 17 C -0.04 -0.72 6.58 37.18 0.24 -0.47 16 18 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 19 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 20 H 0.04 0.71 5.43 -51.93 -0.28 0.43 16 21 H 0.08 2.04 6.79 -51.93 -0.35 1.68 16 22 H 0.04 0.64 6.49 -51.93 -0.34 0.30 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.32 7.13 -51.93 -0.37 0.94 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.10 1.83 6.04 -51.93 -0.31 1.52 16 27 H 0.10 1.66 7.95 -51.92 -0.41 1.24 16 28 H 0.09 1.36 6.60 -51.93 -0.34 1.02 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.10 1.94 8.12 -51.93 -0.42 1.52 16 LS Contribution 246.03 15.07 3.71 3.71 Total: -1.00 -25.55 246.03 -7.57 -33.12 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.46 Total: 0.11 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 0.20 Total: -19.37 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.67 Total: -23.27 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -2.67 Total: -9.56 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -25.55 -7.57 -33.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.649 kcal (2) G-P(sol) polarization free energy of solvation -25.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds