Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 C 1.53002 * 109.46788 * 239.99981 * 2 1 3 5 5 H 1.08997 * 109.47581 * 304.17124 * 4 2 1 6 6 C 1.50701 * 109.46865 * 184.17210 * 4 2 1 7 7 H 1.08003 * 120.00405 * 245.52638 * 6 4 2 8 8 C 1.37880 * 120.00089 * 65.53529 * 6 4 2 9 9 N 1.31520 * 119.99723 * 8.64517 * 8 6 4 10 10 Si 1.86792 * 120.00117 * 188.65005 * 8 6 4 11 11 H 1.48497 * 109.47417 * 89.99557 * 10 8 6 12 12 H 1.48503 * 109.47089 * 209.99754 * 10 8 6 13 13 H 1.48504 * 109.47153 * 329.99244 * 10 8 6 14 14 C 1.53002 * 109.47051 * 64.17841 * 4 2 1 15 15 C 1.53041 * 113.14905 * 275.56577 * 14 4 2 16 16 S 1.81423 * 89.89238 * 211.85483 * 15 14 4 17 17 C 1.53043 * 113.15107 * 175.19654 * 14 4 2 18 18 H 1.08993 * 109.47354 * 173.81237 * 1 2 3 19 19 H 1.09007 * 109.46797 * 293.81366 * 1 2 3 20 20 H 1.09005 * 109.47046 * 53.80756 * 1 2 3 21 21 H 1.08998 * 109.47113 * 120.00445 * 2 1 3 22 22 H 1.08997 * 109.47158 * 307.23889 * 3 2 1 23 23 H 1.08996 * 109.46966 * 67.24096 * 3 2 1 24 24 H 1.09005 * 109.47017 * 187.24161 * 3 2 1 25 25 H 0.97002 * 119.99720 * 180.02562 * 9 8 6 26 26 H 1.08998 * 112.49664 * 45.40608 * 14 4 2 27 27 H 1.09009 * 113.15002 * 327.11314 * 15 14 4 28 28 H 1.08995 * 113.15143 * 96.59362 * 15 14 4 29 29 H 1.09004 * 113.14572 * 263.40120 * 17 14 4 30 30 H 1.08995 * 113.15231 * 32.87818 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6169 -1.7251 -1.2875 6 6 3.5434 -0.8114 -1.1987 7 1 4.1409 -0.2837 -1.9274 8 6 4.1562 -1.5678 -0.2223 9 7 3.4355 -2.3441 0.5572 10 14 6.0100 -1.4898 -0.0065 11 1 6.3511 -0.4159 0.9608 12 1 6.5039 -2.7931 0.5063 13 1 6.6489 -1.1987 -1.3151 14 6 1.6175 0.0581 -2.4963 15 6 0.2012 -0.2810 -2.9666 16 16 0.7024 0.0224 -4.6836 17 6 2.1839 -0.5269 -3.7921 18 1 -0.3634 -1.0216 -0.1108 19 1 -0.3633 0.4150 0.9402 20 1 -0.3633 0.6069 -0.8294 21 1 1.8933 -0.5139 0.8899 22 1 1.5749 1.9923 -0.8181 23 1 1.7864 1.9175 0.9476 24 1 3.1224 1.4452 -0.1295 25 1 3.8666 -2.8760 1.2444 26 1 1.7920 1.1295 -2.3975 27 1 -0.0762 -1.3182 -2.7781 28 1 -0.5495 0.4235 -2.6085 29 1 3.0941 -0.0283 -4.1254 30 1 2.2889 -1.6114 -3.7627 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260650782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = -14.662301 kcal Electronic energy + Delta-G solvation = -11644.618173 eV Core-core repulsion = 9758.522608 eV Total energy + Delta-G solvation = -1886.095565 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.36380 -35.15994 -33.95051 -29.37520 -27.78686 -26.74544 -25.17450 -22.13200 -19.96051 -18.16753 -17.17434 -16.55860 -16.41241 -15.25796 -14.67925 -14.32154 -14.01698 -13.70594 -13.47531 -13.20427 -12.94351 -12.78528 -12.54509 -12.33063 -11.94504 -11.76473 -11.66118 -11.30195 -11.22012 -10.55473 -10.30890 -10.26068 -8.74670 -8.03809 -6.08119 0.95978 1.13726 1.43642 1.47689 1.53647 2.49245 3.28730 3.76392 3.99929 4.31182 4.51628 4.57414 4.60874 4.67702 4.68547 4.87327 4.98887 5.03629 5.13851 5.23623 5.33641 5.42331 5.70492 5.77242 5.85632 6.06810 6.17636 6.47224 7.02378 7.56916 9.04101 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.035544 B = 0.013024 C = 0.010790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.562338 B = 2149.320916 C = 2594.310004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.127 4.127 4 C 0.071 3.929 5 H 0.006 0.994 6 C -0.508 4.508 7 H 0.054 0.946 8 C 0.021 3.979 9 N -0.916 5.916 10 Si 0.933 3.067 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.269 1.269 14 C -0.073 4.073 15 C -0.051 4.051 16 S -0.375 6.375 17 C -0.042 4.042 18 H 0.039 0.961 19 H 0.046 0.954 20 H 0.065 0.935 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.257 0.743 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 4.838 -2.933 7.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C -0.185 4.185 4 C 0.050 3.950 5 H 0.024 0.976 6 C -0.547 4.547 7 H 0.073 0.927 8 C -0.178 4.178 9 N -0.556 5.556 10 Si 0.760 3.240 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.194 1.194 14 C -0.093 4.093 15 C -0.199 4.199 16 S -0.149 6.149 17 C -0.190 4.190 18 H 0.058 0.942 19 H 0.065 0.935 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.616 5.140 -4.144 8.056 hybrid contribution 1.538 -0.775 1.294 2.154 sum -3.078 4.365 -2.851 6.054 Atomic orbital electron populations 1.21947 0.96074 1.00587 1.01085 1.20983 0.93931 0.95723 1.00059 1.21705 1.00817 0.95989 0.99941 1.18628 0.94174 0.92839 0.89354 0.97570 1.21342 0.92595 1.28085 1.12644 0.92740 1.25510 1.00751 0.95033 0.96475 1.70062 1.36490 1.27338 1.21698 0.85939 0.82723 0.76891 0.78402 1.20573 1.21907 1.19380 1.22539 0.90832 1.01234 0.94701 1.24591 1.02054 1.05215 0.87998 1.88629 1.17131 1.87951 1.21227 1.24240 0.96693 1.03636 0.94456 0.94224 0.93471 0.91649 0.93795 0.92394 0.94079 0.93920 0.93425 0.87797 0.88420 0.87413 0.89342 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 8.27 71.98 0.60 -4.09 16 2 C -0.09 -3.60 2.59 -10.79 -0.03 -3.63 16 3 C -0.13 -4.65 8.49 71.98 0.61 -4.04 16 4 C 0.07 3.09 1.32 -11.54 -0.02 3.07 16 5 H 0.01 0.31 7.84 -2.39 -0.02 0.29 16 6 C -0.51 -25.04 6.74 25.60 0.17 -24.87 16 7 H 0.05 2.65 7.48 -2.91 -0.02 2.63 16 8 C 0.02 1.09 5.18 84.65 0.44 1.53 16 9 N -0.92 -50.57 12.12 21.45 0.26 -50.31 16 10 Si 0.93 41.85 29.55 68.60 2.03 43.88 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 14 C -0.07 -2.63 2.34 -10.76 -0.03 -2.65 16 15 C -0.05 -1.61 6.00 72.00 0.43 -1.18 16 16 S -0.38 -12.66 24.79 -56.49 -1.40 -14.06 16 17 C -0.04 -1.51 6.58 72.00 0.47 -1.03 16 18 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 19 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 20 H 0.06 1.89 5.43 -2.38 -0.01 1.88 16 21 H 0.04 2.16 6.79 -2.39 -0.02 2.14 16 22 H 0.06 1.85 6.49 -2.39 -0.02 1.83 16 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.71 7.13 -2.38 -0.02 1.69 16 25 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 26 H 0.10 3.62 6.04 -2.39 -0.01 3.61 16 27 H 0.10 3.13 7.95 -2.38 -0.02 3.11 16 28 H 0.11 2.97 6.60 -2.39 -0.02 2.95 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 3.47 8.12 -2.39 -0.02 3.45 16 Total: -1.00 -53.56 246.03 4.64 -48.91 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.10 Total: 8.46 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 2.65 Total: -36.88 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.26 Total: -50.31 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -12.66 SS G_CDS: -1.40 Total: -14.06 kcal Total: -53.56 4.64 -48.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.251 kcal (2) G-P(sol) polarization free energy of solvation -53.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds