Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47263 * 2 1 4 4 H 1.09005 * 109.47471 * 306.22266 * 3 2 1 5 5 C 1.53005 * 109.47419 * 186.21990 * 3 2 1 6 6 C 1.50697 * 109.46575 * 65.00118 * 5 3 2 7 7 H 1.07994 * 120.00811 * 0.02562 * 6 5 3 8 8 C 1.37882 * 119.99497 * 180.02562 * 6 5 3 9 9 N 1.31511 * 119.99886 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00038 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47234 * 90.00309 * 10 8 6 12 12 H 1.48499 * 109.47388 * 210.00179 * 10 8 6 13 13 H 1.48503 * 109.47342 * 330.00325 * 10 8 6 14 14 C 1.53003 * 109.47073 * 66.21694 * 3 2 1 15 15 C 1.53035 * 113.15599 * 274.07395 * 14 3 2 16 16 S 1.81428 * 89.89231 * 211.85187 * 15 14 3 17 17 C 1.53041 * 113.15255 * 173.69566 * 14 3 2 18 18 H 1.08992 * 109.47173 * 184.09064 * 1 2 3 19 19 H 1.08997 * 109.47175 * 304.09417 * 1 2 3 20 20 H 1.09003 * 109.47123 * 64.09264 * 1 2 3 21 21 H 1.09004 * 109.46785 * 239.99970 * 2 1 3 22 22 H 1.08996 * 109.47327 * 120.00461 * 2 1 3 23 23 H 1.08998 * 109.46929 * 305.00310 * 5 3 2 24 24 H 1.08998 * 109.46856 * 185.00028 * 5 3 2 25 25 H 0.97002 * 119.99741 * 179.97438 * 9 8 6 26 26 H 1.09004 * 112.48883 * 43.91518 * 14 3 2 27 27 H 1.09007 * 113.14720 * 327.11106 * 15 14 3 28 28 H 1.08994 * 113.15074 * 96.58972 * 15 14 3 29 29 H 1.09006 * 113.15002 * 263.41371 * 17 14 3 30 30 H 1.08996 * 113.14908 * 32.89093 * 17 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5886 1.9875 -0.8291 5 6 3.5621 1.4453 -0.1563 6 6 3.9290 0.8927 -1.5094 7 1 3.1543 0.5720 -2.1900 8 6 5.2540 0.7966 -1.8785 9 7 6.1975 1.1867 -1.0496 10 14 5.7091 0.1110 -3.5555 11 1 5.7720 1.2186 -4.5427 12 1 7.0334 -0.5561 -3.4749 13 1 4.6835 -0.8747 -3.9822 14 6 1.6616 2.1172 1.3200 15 6 0.2578 2.7263 1.3037 16 16 0.8135 4.0286 2.4381 17 6 2.2629 3.5160 1.4749 18 1 -0.3633 -1.0250 0.0733 19 1 -0.3633 0.5760 0.8510 20 1 -0.3633 0.4490 -0.9244 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 4.0084 0.8265 0.6221 24 1 3.9345 2.4658 -0.0674 25 1 7.1297 1.1187 -1.3091 26 1 1.8412 1.4756 2.1828 27 1 -0.0330 3.1065 0.3243 28 1 -0.4980 2.0727 1.7390 29 1 3.1866 3.5237 2.0536 30 1 2.3587 4.0483 0.5286 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676645.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = -8.273783 kcal Electronic energy + Delta-G solvation = -11244.107827 eV Core-core repulsion = 9358.289289 eV Total energy + Delta-G solvation = -1885.818538 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -37.98379 -33.44717 -32.27783 -29.43096 -25.82774 -25.24972 -22.07000 -21.36725 -19.12377 -16.49559 -15.89603 -15.23940 -14.56210 -14.04190 -13.36903 -12.87704 -12.61066 -12.51943 -12.10337 -11.96096 -11.37246 -11.16742 -10.99679 -10.68001 -10.59436 -10.37420 -10.30616 -9.76725 -9.52543 -9.09929 -8.90335 -8.35944 -7.54868 -6.01544 -4.03058 2.10276 2.27731 3.30325 3.37397 3.39763 4.43974 4.77984 5.06901 5.33572 5.35589 5.57121 5.66260 5.70402 5.76183 5.86595 6.02571 6.04072 6.20008 6.43041 6.54370 6.57990 6.92318 7.02439 7.14286 7.64750 7.78483 7.97965 8.40529 9.03218 9.60726 11.09592 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.044936 B = 0.009291 C = 0.008072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.961380 B = 3012.885070 C = 3467.742770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.069 4.069 4 H 0.062 0.938 5 C 0.027 3.973 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.888 3.112 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C -0.082 4.082 15 C -0.066 4.066 16 S -0.352 6.352 17 C -0.056 4.056 18 H 0.043 0.957 19 H 0.052 0.948 20 H 0.048 0.952 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.017 0.983 24 H 0.019 0.981 25 H 0.260 0.740 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 0.588 3.021 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.148 4.148 3 C -0.090 4.090 4 H 0.080 0.920 5 C -0.010 4.010 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.102 4.102 15 C -0.214 4.214 16 S -0.126 6.126 17 C -0.204 4.204 18 H 0.062 0.938 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.583 1.543 4.112 10.542 hybrid contribution 0.717 -0.930 -1.711 2.075 sum -8.866 0.613 2.401 9.206 Atomic orbital electron populations 1.22027 0.97809 1.00519 1.01231 1.21498 0.93408 0.97318 1.02580 1.21308 1.00397 0.94562 0.92701 0.91975 1.19136 0.87582 0.97331 0.96936 1.21229 0.91693 1.41598 1.00909 0.92563 1.25006 0.96766 0.95678 0.96970 1.69956 0.99993 1.47869 1.35600 0.86656 0.77835 0.79202 0.84679 1.20766 1.21307 1.19906 1.22619 0.90712 0.95131 1.01733 1.24628 1.02013 0.95439 0.99327 1.88764 1.16186 1.57039 1.50602 1.24392 0.97814 0.97761 1.00435 0.93823 0.92883 0.93310 0.90692 0.92873 0.96461 0.96262 0.93054 0.88041 0.88131 0.89000 0.88696 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.49 37.16 0.35 -1.83 16 2 C -0.11 -1.89 5.28 -26.73 -0.14 -2.03 16 3 C -0.07 -1.26 1.69 -90.62 -0.15 -1.42 16 4 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 5 C 0.03 0.65 4.26 -27.88 -0.12 0.53 16 6 C -0.52 -13.72 8.32 -34.44 -0.29 -14.00 16 7 H 0.06 1.46 7.09 -52.49 -0.37 1.08 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 10 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C -0.08 -1.30 2.62 -90.58 -0.24 -1.53 16 15 C -0.07 -0.92 6.01 37.18 0.22 -0.70 16 16 S -0.35 -5.58 24.80 -107.50 -2.67 -8.25 16 17 C -0.06 -0.91 6.14 37.18 0.23 -0.68 16 18 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 19 H 0.05 0.66 4.81 -51.93 -0.25 0.41 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.07 1.44 6.80 -51.93 -0.35 1.08 16 22 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.48 7.02 -51.93 -0.36 0.12 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 27 H 0.10 1.34 7.93 -51.92 -0.41 0.93 16 28 H 0.09 1.15 6.61 -51.93 -0.34 0.80 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.10 1.72 8.06 -51.93 -0.42 1.30 16 LS Contribution 251.49 15.07 3.79 3.79 Total: -1.00 -28.04 251.49 -7.98 -36.02 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.59 Total: -2.12 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.23 Total: -20.18 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -2.67 Total: -8.25 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.04 -7.98 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676645.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.746 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds