Wall clock time and date at job start Mon Mar 30 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47263 * 2 1 4 4 H 1.09005 * 109.47471 * 306.22266 * 3 2 1 5 5 C 1.53005 * 109.47419 * 186.21990 * 3 2 1 6 6 C 1.50697 * 109.46575 * 65.00118 * 5 3 2 7 7 H 1.07994 * 120.00811 * 0.02562 * 6 5 3 8 8 C 1.37882 * 119.99497 * 180.02562 * 6 5 3 9 9 N 1.31511 * 119.99886 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00038 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47234 * 90.00309 * 10 8 6 12 12 H 1.48499 * 109.47388 * 210.00179 * 10 8 6 13 13 H 1.48503 * 109.47342 * 330.00325 * 10 8 6 14 14 C 1.53003 * 109.47073 * 66.21694 * 3 2 1 15 15 C 1.53035 * 113.15599 * 274.07395 * 14 3 2 16 16 S 1.81428 * 89.89231 * 211.85187 * 15 14 3 17 17 C 1.53041 * 113.15255 * 173.69566 * 14 3 2 18 18 H 1.08992 * 109.47173 * 184.09064 * 1 2 3 19 19 H 1.08997 * 109.47175 * 304.09417 * 1 2 3 20 20 H 1.09003 * 109.47123 * 64.09264 * 1 2 3 21 21 H 1.09004 * 109.46785 * 239.99970 * 2 1 3 22 22 H 1.08996 * 109.47327 * 120.00461 * 2 1 3 23 23 H 1.08998 * 109.46929 * 305.00310 * 5 3 2 24 24 H 1.08998 * 109.46856 * 185.00028 * 5 3 2 25 25 H 0.97002 * 119.99741 * 179.97438 * 9 8 6 26 26 H 1.09004 * 112.48883 * 43.91518 * 14 3 2 27 27 H 1.09007 * 113.14720 * 327.11106 * 15 14 3 28 28 H 1.08994 * 113.15074 * 96.58972 * 15 14 3 29 29 H 1.09006 * 113.15002 * 263.41371 * 17 14 3 30 30 H 1.08996 * 113.14908 * 32.89093 * 17 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5886 1.9875 -0.8291 5 6 3.5621 1.4453 -0.1563 6 6 3.9290 0.8927 -1.5094 7 1 3.1543 0.5720 -2.1900 8 6 5.2540 0.7966 -1.8785 9 7 6.1975 1.1867 -1.0496 10 14 5.7091 0.1110 -3.5555 11 1 5.7720 1.2186 -4.5427 12 1 7.0334 -0.5561 -3.4749 13 1 4.6835 -0.8747 -3.9822 14 6 1.6616 2.1172 1.3200 15 6 0.2578 2.7263 1.3037 16 16 0.8135 4.0286 2.4381 17 6 2.2629 3.5160 1.4749 18 1 -0.3633 -1.0250 0.0733 19 1 -0.3633 0.5760 0.8510 20 1 -0.3633 0.4490 -0.9244 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 4.0084 0.8265 0.6221 24 1 3.9345 2.4658 -0.0674 25 1 7.1297 1.1187 -1.3091 26 1 1.8412 1.4756 2.1828 27 1 -0.0330 3.1065 0.3243 28 1 -0.4980 2.0727 1.7390 29 1 3.1866 3.5237 2.0536 30 1 2.3587 4.0483 0.5286 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676645.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:16 Heat of formation + Delta-G solvation = -22.852695 kcal Electronic energy + Delta-G solvation = -11244.740016 eV Core-core repulsion = 9358.289289 eV Total energy + Delta-G solvation = -1886.450727 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.38887 -35.23092 -33.87737 -31.09759 -27.26222 -26.85224 -23.76622 -22.73957 -20.58520 -18.44801 -17.27287 -16.63039 -16.39224 -15.46215 -14.84988 -14.32983 -14.12658 -13.90175 -13.72747 -13.24205 -13.05246 -12.80559 -12.48443 -12.35802 -12.17102 -11.90120 -11.68027 -11.38166 -11.17956 -10.80380 -10.50574 -10.43900 -8.81056 -8.13368 -6.21117 0.87201 1.02631 1.42268 1.42902 1.53068 2.44680 3.20786 3.49294 3.81043 4.05693 4.34962 4.40261 4.46471 4.53712 4.60255 4.75641 4.76251 4.90403 5.14128 5.24088 5.27860 5.43996 5.48111 5.61193 5.70570 5.89959 5.96058 6.34644 6.96010 7.46796 8.97985 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.044936 B = 0.009291 C = 0.008072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.961380 B = 3012.885070 C = 3467.742770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.057 4.057 4 H 0.064 0.936 5 C 0.032 3.968 6 C -0.525 4.525 7 H 0.062 0.938 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.953 3.047 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.263 1.263 14 C -0.077 4.077 15 C -0.048 4.048 16 S -0.364 6.364 17 C -0.060 4.060 18 H 0.057 0.943 19 H 0.069 0.931 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.049 0.951 23 H -0.011 1.011 24 H -0.002 1.002 25 H 0.260 0.740 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 0.139 2.461 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.078 4.078 4 H 0.082 0.918 5 C -0.005 4.005 6 C -0.563 4.563 7 H 0.080 0.920 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.779 3.221 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.187 1.187 14 C -0.097 4.097 15 C -0.196 4.196 16 S -0.137 6.137 17 C -0.208 4.208 18 H 0.076 0.924 19 H 0.088 0.912 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.007 0.993 24 H 0.016 0.984 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.479 1.093 3.549 12.065 hybrid contribution 1.319 -0.778 -1.507 2.148 sum -10.161 0.315 2.043 10.369 Atomic orbital electron populations 1.21941 0.94517 1.01942 1.02303 1.21435 0.96261 0.95759 1.01222 1.21097 0.96334 0.96059 0.94301 0.91755 1.19022 0.91505 0.95110 0.94904 1.21679 0.91891 1.40746 1.02012 0.92013 1.25873 0.96977 0.96253 1.00717 1.70091 1.00261 1.49505 1.37644 0.85618 0.77546 0.78722 0.80202 1.20178 1.21335 1.18722 1.22520 0.92441 0.94556 1.00220 1.24591 1.00911 0.94486 0.99598 1.88844 1.15864 1.57958 1.51081 1.24360 0.97896 0.98297 1.00287 0.92417 0.91210 0.92677 0.93193 0.93196 0.99304 0.98375 0.93151 0.87811 0.86857 0.86544 0.89801 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.49 71.98 0.68 -2.93 16 2 C -0.11 -3.58 5.28 30.59 0.16 -3.42 16 3 C -0.06 -2.05 1.69 -10.79 -0.02 -2.07 16 4 H 0.06 2.29 7.87 -2.38 -0.02 2.27 16 5 C 0.03 1.55 4.26 29.85 0.13 1.67 16 6 C -0.53 -28.15 8.32 25.60 0.21 -27.94 16 7 H 0.06 3.17 7.09 -2.91 -0.02 3.15 16 8 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 9 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 10 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 14 C -0.08 -2.34 2.62 -10.77 -0.03 -2.36 16 15 C -0.05 -1.20 6.01 71.99 0.43 -0.76 16 16 S -0.36 -10.88 24.80 -56.49 -1.40 -12.28 16 17 C -0.06 -1.93 6.14 72.00 0.44 -1.49 16 18 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 19 H 0.07 1.45 4.81 -2.39 -0.01 1.44 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.05 1.88 6.80 -2.38 -0.02 1.86 16 22 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H 0.00 -0.11 7.02 -2.39 -0.02 -0.13 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.10 3.12 8.10 -2.38 -0.02 3.10 16 27 H 0.11 2.59 7.93 -2.38 -0.02 2.57 16 28 H 0.12 2.37 6.61 -2.39 -0.02 2.36 16 29 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.10 3.30 8.06 -2.39 -0.02 3.28 16 Total: -1.00 -60.03 251.49 4.48 -55.54 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.10 Total: 5.60 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 2.47 Total: -38.89 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.28 Total: -55.41 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -10.88 SS G_CDS: -1.40 Total: -12.28 kcal Total: -60.03 4.48 -55.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676645.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.691 kcal (2) G-P(sol) polarization free energy of solvation -60.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds